How to find the co ordinates of long reads (simulated by Badreads) with respect to the reference genome

How to find the co ordinates of long reads (simulated by Badreads) with respect to the reference genome

0

Hi,

I have simulated a set of ONT long reads (10x) of E coli using the Badreads simulator tool. I was wondering is there any way I can know the co ordinates (positions) of these long reads in the reference genome. I know most simulators have some metadata attached to the files that they are generating, but I could not find any thing like that in the Badreads file.

Does any one have any idea?

Badread Tool github page : github.com/rrwick/Badread

Thank you for all the help.


mapping


Badreads


reference


genome


assembly


long


reads

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