ProcessMethylation450Data function of TCGA-Assembler causing subscript out of bound error

ProcessMethylation450Data function of TCGA-Assembler causing subscript out of bound error

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ProcessMethylation450Data function of TCGA-Assembler causing subscript out of bound error. However, if a take a little smaller subset of data, it is working fine.

list_methylation_450 <- ProcessMethylation450Data(inputFilePath = “./QuickStartExample/Part1_DownloadedData/TCGABRCA.txt”, outputFileName = paste(sCancer, “methylation_450”, sep = “__”), outputFileFolder = sPath2)
Loading data.
Process CpG sites corresponding to multiple genes, 16% done.
Process CpG sites corresponding to multiple genes, 31% done.
Process CpG sites corresponding to multiple genes, 46% done.
Process CpG sites corresponding to multiple genes, 61% done.
Process CpG sites corresponding to multiple genes, 76% done.
Process CpG sites corresponding to multiple genes, 91% done.
Error in [<-(*tmp*, AddIndex, , value = TempAddDes) :
subscript out of bounds

Stuck up with this problem since last week. Looking forward d to assistance.


of


ProcessMethylation450Data


out


subscript


bounds

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