Counting from GENCODE for the vM27 mouse reference:
wget http://ftp.ebi.ac.uk/pub/databases/gencode/Gencode_mouse/release_M27/gencode.vM27.annotation.gtf.gz
#/ In R:
library(rtracklayer)
gtf <- rtracklayer::import("~/gencode.vM27.annotation.gtf.gz")
table(as.character(seqnames(gtf[gtf$type=="gene"])))
chr1 chr10 chr11 chr12 chr13 chr14 chr15 chr16 chr17 chr18 chr19 chr2 chr3 chr4 chr5 chr6 chr7 chr8 chr9 chrM chrX chrY
3445 2622 2999 2474 2502 2509 1852 1602 2320 1399 1394 3794 2884 2861 3251 3129 4713 2535 2845 37 2623 1569
Traffic: 2384 users visited in the last hour
Read more here: Source link