Why are there no peaks for Y chromosome in ATAC-seq?
Hi! This was my first to do the ATAC-seq on a cell culture (which is from a 19-year old male individual). However, after data analysis, there are no peaks for the Y chromosome. Is there any possible explanation for that? I was assuming or expecting that there would be some peaks for chromosome Y because the cells are from a male donor.
Thank you very much in advance for the help and input.
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