infer type of single-cell chemistry from fastq

scRNAseq – infer type of single-cell chemistry from fastq

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Hello all,

it’s a known thing there’s lots of variants of single cell experiments – e.g. kb --list from kallisto-bustools lists at least 10 different variants. If you’re processing a reasonably big selection of scRNA-seq experiments, it would make sense to try and infer it automatically.

Is there by any chance a tool that can guess the chemistry from the reads?

Thank you in advance, as always.


scRNA-seq


single cell


RNA-Seq

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