Clustering without having any replication
I have raw read counts of three different samples (sub-types) with no replications
like this
> head(oc)
sample1 sample2 sample3
WASH7P 3 29 48
MIR6859-1 0 6 4
DDX11L17 0 2 2
WASH9P 3 92 101
MTND1P23 8 154 139
MTND2P28 3104 3491 3814
>
How I can normalise this data frame because both of edger and deseq2 software needs a design of conditions
My ultimate goal is having clustering of genes in these samples but for that I would need normalised counts
Thanks for any help
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