featureCounts for WGS instead of RNA-seq

Hello all,

I have done whole genome sequencing and aligned reads on a reference genome.

I have some bam files.

I want to get the number of reads mapped to sepecific regions defined in a gff3 files.

I have used featureCounts for RNA-seq but not for WGS.

Can I use it to get read counts? Which library type do I need to specify?

FYI, I did paired-end seq.

If it is not recommended, any suggestions?