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This package is for version 2.14 of Bioconductor;
for the stable, up-to-date release version, see
GRENITS.
Gene Regulatory Network Inference Using Time Series
Bioconductor version: 2.14
The package offers four network inference statistical models using Dynamic Bayesian Networks and Gibbs Variable Selection: a linear interaction model, two linear interaction models with added experimental noise (Gaussian and Student distributed) for the case where replicates are available and a non-linear interaction model.
Author: Edward Morrissey
Maintainer: Edward Morrissey <edward.morrissey at gmail.com>
Citation (from within R,
enter citation("GRENITS")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GRENITS")
Documentation
To view documentation for the version of this package installed
in your system, start R and enter:
browseVignettes("GRENITS")
Details
| biocViews | GeneRegulation, GraphAndNetwork, NetworkInference, Software, TimeCourse |
| Version | 1.16.1 |
| In Bioconductor since | BioC 2.9 (R-2.14) (4.5 years) |
| License | GPL (>= 2) |
| Depends | R (>= 2.12.0), Rcpp (>= 0.8.6), RcppArmadillo (>= 0.2.8), ggplot2 (>= 0.9.0) |
| Imports | graphics, grDevices, reshape2, stats, utils |
| LinkingTo | Rcpp, RcppArmadillo |
| Suggests | network |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
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Read more here: Source link