What is the correct syntax for BioPythons SeqIO.parse()

What is the correct syntax for BioPythons SeqIO.parse()

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When reading in an assembly with BioPython’s SeqIO the tutorial indicated when reading in multiple records one should do the following:

records = list(SeqIO.parse("somefile.fasta", "fasta"))

This produces the expected behaviour of a subscriptable list of records. However this syntax also functions fine:

records = SeqIO.parse("somefile.fasta", 'fasta')

The only difference being that I cant subscript this object, but I can loop over it.

So, what is the benefit of one over the other?

Unless you intend to access a specific record by subscript why would you wrap the SeqIO.parse() as a list? Is it perhaps more memory efficient somehow?


assembly


biopython

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