net.sf.samtools.SAMTextHeaderCodec$ParsedHeaderLine java code examples | Tabnine

private void parsePGLine(final ParsedHeaderLine parsedHeaderLine) {
  assert(HeaderRecordType.PG.equals(parsedHeaderLine.getHeaderRecordType()));
  if (!parsedHeaderLine.requireTag(SAMProgramRecord.PROGRAM_GROUP_ID_TAG)) {
    return;
  }
  final SAMProgramRecord programRecord = new SAMProgramRecord(parsedHeaderLine.removeValue(SAMProgramRecord.PROGRAM_GROUP_ID_TAG));
  transferAttributes(programRecord, parsedHeaderLine.mKeyValuePairs);
  mFileHeader.addProgramRecord(programRecord);
}