This package is for version 3.9 of Bioconductor;
for the stable, up-to-date release version, see
ERSSA.
Empirical RNA-seq Sample Size Analysis
Bioconductor version: 3.9
The ERSSA package takes user supplied RNA-seq differential expression dataset and calculates the number of differentially expressed genes at varying biological replicate levels. This allows the user to determine, without relying on any a priori assumptions, whether sufficient differential detection has been acheived with their RNA-seq dataset.
Author: Zixuan Shao [aut, cre]
Maintainer: Zixuan Shao <Zixuanshao.zach at gmail.com>
Citation (from within R,
enter citation("ERSSA")):
Installation
To install this package, start R (version
“3.6”) and enter:
if (!requireNamespace("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ERSSA")
For older versions of R, please refer to the appropriate
Bioconductor release.
Documentation
To view documentation for the version of this package installed
in your system, start R and enter:
browseVignettes("ERSSA")
Details
| biocViews | DifferentialExpression, GeneExpression, ImmunoOncology, MultipleComparison, QualityControl, RNASeq, Software, Transcription |
| Version | 1.2.0 |
| In Bioconductor since | BioC 3.8 (R-3.5) (1 year) |
| License | GPL-3 | file LICENSE |
| Depends | R (>= 3.5.0) |
| Imports | edgeR(>= 3.23.3), DESeq2(>= 1.21.16), ggplot2 (>= 3.0.0), RColorBrewer (>= 1.1-2), plyr (>= 1.8.4), BiocParallel(>= 1.15.8), grDevices, stats, utils |
| LinkingTo | |
| Suggests | BiocStyle, knitr, rmarkdown |
| SystemRequirements | |
| Enhances | |
| URL | github.com/zshao1/ERSSA |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report |
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Installation instructions to use this
package in your R session.
Read more here: Source link