TCGA dataset normalization
hi. i am new to machine learning. i want to normalize my data which I downloaded from UCSC Xena browser for pancreatic cancer TCGA PAAD is its id. when I try to run this code it is showing error given below
library( "DESeq2" )
library(ggplot2)
countData <- read.csv('PAAD.csv', header = TRUE, sep = ",")
head(countData)
options(max.print = 100000)
metaData <- read.csv('PAADPheno.csv', header = TRUE, sep = ",")
metaData
dds <- DESeqDataSetFromMatrix(countData=countData,
colData=colData,
design=~adenocarcinoma_invasion)
> dds <- DESeqDataSetFromMatrix(countData=countData,
+ colData=colData,
+ design=~adenocarcinoma_invasion)
Error in `rownames<-`(`*tmp*`, value = colnames(countData)) :
attempt to set 'rownames' on an object with no dimensions
please help me resolving this issue or give me the code for it.
• 32 views
Read more here: Source link