Bioconductor – Dune

DOI: 10.18129/B9.bioc.Dune  

 

This package is for version 3.11 of Bioconductor;
for the stable, up-to-date release version, see
Dune.

Improving replicability in single-cell RNA-Seq cell type discovery

Bioconductor version: 3.11

Given a set of clustering labels, Dune merges pairs of clusters to increase mean ARI between labels, improving replicability.

Author: Hector Roux de Bezieux [aut, cre] , Kelly Street [aut]

Maintainer: Hector Roux de Bezieux <hector.rouxdebezieux at berkeley.edu>

Citation (from within R,
enter citation("Dune")):

Installation

To install this package, start R (version
“4.0”) and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("Dune")

For older versions of R, please refer to the appropriate
Bioconductor release.

Documentation

To view documentation for the version of this package installed
in your system, start R and enter:

browseVignettes("Dune")

 

Details

biocViews Clustering, GeneExpression, RNASeq, SingleCell, Software, Transcriptomics, Visualization
Version 1.0.1
In Bioconductor since BioC 3.11 (R-4.0) (0.5 years)
License MIT + file LICENSE
Depends R (>= 4.0)
Imports BiocParallel, SummarizedExperiment, mclust, utils, ggplot2, dplyr, tidyr, RColorBrewer, magrittr, gganimate, purrr
LinkingTo
Suggests knitr, rmarkdown, testthat (>= 2.1.0)
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

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package in your R session.


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