How to best predict effect for each variant and count specific effect found in each individual using variant effect predictor?

How to best predict effect for each variant and count specific effect found in each individual using variant effect predictor?

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I have multiple .vcf files for individuals (also have merged.vcf with all indivs.). I would like to predict each variants effect and then count variants with, e.g. IMPACT=HIGH.

Is there an automated tool to do such workflow for any kind of variable i wan’t to compare between individuals?


vcf


vep

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