Removal of multiple samples from vcf file
I have a vcf file which has been filtered “vcftools –vcf file_filtered.vcf –maf 0.05 –max-missing 0.8 –min-meanDP 10 –recode –out snp_filtered_0.05.vcf.gz”
this output file will be used to remove 13 samples from .vcf file.gz.
Kindly help me to do.
After wards I will do haploview.
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