Linear Models for Microarray Data
Bioconductor version: 2.5
Data analysis, linear models and differential expression for microarray data.
Author: Gordon Smyth with contributions from Matthew Ritchie, Jeremy Silver, James Wettenhall, Natalie Thorne, Mette Langaas, Egil Ferkingstad, Marcus Davy, Francois Pepin, Dongseok Choi, Di Wu, Alicia Oshlack, Carolyn de Graaf, Yifang Hu, Wei Shi and Belinda Phipson.
Maintainer: Gordon Smyth <smyth at wehi.edu.au>
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("limma")
To cite this package in a publication, start R and enter:
citation("limma")
Documentation
| limma.pdf | ||
| usersguide.pdf | ||
| Reference Manual |
Details
| biocViews | Microarray, OneChannel, TwoChannel, DataImport, QualityControl, Preprocessing, Bioinformatics, DifferentialExpression, MultipleComparisons, TimeCourse |
| Depends | R (>= 2.3.0), methods |
| Imports | |
| Suggests | affy, marray, MASS, org.Hs.eg.db, splines, statmod (>= 1.2.2), vsn |
| System Requirements | |
| License | LGPL |
| URL | bioinf.wehi.edu.au/limma |
| Depends On Me | AffyExpress, affylmGUI, Agi4x44PreProcess, AgiMicroRna, arrayQuality, CALIB, CCl4, cghMCR, ChIPpeakAnno, clippda, codelink, convert, HTqPCR, limmaGUI, maDB, maigesPack, marray, qpcrNorm, Ringo, RMAGEML, RTools4TB, snapCGH, timecourse |
| Imports Me | affycoretools, ArrayExpress, arrayQualityMetrics, ArrayTools, beadarray, betr, ChIPpeakAnno, edgeR, explorase, HTqPCR, maSigPro, Ringo, RNAither, SSPA, vsn |
| Suggests Me | ABarray, beadarraySNP, BiocCaseStudies, Category, CMA, dyebias, GeneSelector, GEOquery, lumi, methylumi, oligo, OLIN, plw, puma, rtracklayer |
| Version | 3.2.3 |
| Since | Bioconductor 1.6 (R-2.1) or earlier |
Package Downloads
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