siRNA, Anti-Human LRRC41, LNA (SIRGT34852WQ-LNA)

For research use only. Not intended for any clinical use. Name * Phone * Email * Subject Project Description …

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KEGG T07682: 118706260

Entry 118725205         ncRNA     T07682                                  Name (RefSeq) U1 spliceosomal RNA   KO K14276   U1 spliceosomal RNA Organism pkl  Pipistrellus kuhlii (Kuhl’s pipistrelle) Pathway pkl03040   Spliceosome Brite KEGG Orthology (KO) [BR:pkl00001] 09120 Genetic Information Processing  09121 Transcription   03040 Spliceosome    118725205 09180 Brite Hierarchies  09182 Protein families: genetic information processing   03041 Spliceosome [BR:pkl03041]    118725205  09184 RNA family   03100 Non-coding RNAs [BR:pkl03100]    118725205Spliceosome [BR:pkl03041] Splicing related RNAs  118725205Non-coding RNAs [BR:pkl03100] Small non-coding…

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Antimicrobial potential of Streptomyces coeruleofuscus SCJ isolated from microbiologically unexplored garden soil in Northwest Morocco

Zaman, S. B. et al. A review on antibiotic resistance: Alarm bells are ringing. Cureus doi.org/10.7759/cureus.1403 (2017). Article  PubMed  PubMed Central  Google Scholar  Peterson, E. & Kaur, P. Antibiotic resistance mechanisms in bacteria: Relationships between resistance determinants of antibiotic producers, environmental bacteria, and clinical pathogens. Front. Microbiol. 9, 2928 (2018)….

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Author Correction: Prime editing using CRISPR-Cas12a and circular RNAs in human cells

New Cornerstone Science Laboratory, Center for Genome Editing, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China Ronghong Liang, Zixin He, Haocheng Zhu, Jiacheng Hu, Guanwen Liu, Meiyan Liu, Rui Zhang & Caixia Gao College of Advanced Agricultural Sciences, University of Chinese Academy of Sciences, Beijing, China Zixin He, Haocheng Zhu, Meiyan Liu & Caixia Gao Qi Biodesign, Beijing,…

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Use of CD32, CD44 and CD71 to differentiate follicular lymphoma and diffuse large B-cell lymphoma subtypes by flow cytometry

Many lymphomas can be immunophenotyped by flow cytometry (FCM), providing valuable diagnostic information.1 However, FCM cannot typically be used to distinguish follicular lymphoma (FL), diffuse large B-cell lymphoma, germinal centre type (DLBCL-GCB) and diffuse large B-cell lymphoma, non-germinal centre type (DLBCL-nGCB). To expand the utility of clinical FCM, we compared…

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New Mechanism of mtDNA Release: Groundbreaking Discovery

A Groundbreaking Discovery: New Mechanism of mtDNA Release Scientists have recently discovered a breakthrough pathway for the release of mitochondrial DNA (mtDNA) during Herpes Simplex Virus-1 (HSV-1) infection or mitochondrial transcription factor A (TFAM) deficiency. This novel mechanism, distinct from previously established ones, does not involve BAK, BAX, or VDACs,…

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NYU High Performance Computing – HPC Projects

Depending on your role, you will see the corresponding interface at the Portal. HPC Project Owner You can register an HPC project if you are a full-time faculty and sponsoring a currently active HPC account for research or instruction. If you are a part-time faculty teaching a course, please get…

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KEGG T01015: 4329963

Entry 4332822           CDS       T01015                                  Name (RefSeq) LOW QUALITY PROTEIN: nuclear cap-binding protein subunit 1-like   KO K12882   nuclear cap-binding protein subunit 1 Organism osa  Oryza sativa japonica (Japanese rice) (RefSeq) Pathway osa03013   Nucleocytoplasmic transport osa03015   mRNA surveillance pathway osa03040   Spliceosome Brite KEGG Orthology (KO) [BR:osa00001] 09120 Genetic Information Processing  09121 Transcription   03040 Spliceosome    4332822  09122 Translation   03013 Nucleocytoplasmic transport    4332822   03015 mRNA…

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Deploy Trained Model with Vertex AI for Text Classification

Deploy Trained Model with Vertex AI for Text Classification Introduction Deploying the Trained Model Inspecting the Model Metrics Changing the Confidence Threshold Confusion Metrics for Model Evaluation The Process of Deploying the Model Deploying the Model Using Code Obtaining the Model Name Deploying the Model Checking the Progress of the…

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Ubuntu Manpage: gt-encseq-encode – Encode sequence files (FASTA/FASTQ, GenBank, EMBL) efficiently.

Provided by: genometools_1.6.5+ds-2_amd64 NAME gt-encseq-encode – Encode sequence files (FASTA/FASTQ, GenBank, EMBL) efficiently. SYNOPSIS gt encseq encode sequence_file [sequence_file [sequence_file …]] DESCRIPTION -showstats [yes|no] show compression results (default: no) -ssp [yes|no] output sequence separator positions to file (default: yes) -des [yes|no] output sequence descriptions to file (default: yes) -sds [yes|no]…

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Innovative Mechanism for Removal of Malfunctioning Mitochondrial DNA Triggers Inflammation

A breakthrough study by scientists at the Salk Institute and UC San Diego has discovered an innovative mechanism related to the removal of malfunctioning mitochondrial DNA (mtDNA) from mitochondria, which triggers an innate immune response leading to inflammation. This mechanism is now understood to play a critical role in aging…

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Gut Microbiota Impacts Bone Mineral Density in Older Women

The microbiota of the gut has an impact on bone mineral density (BMD) and osteoporosis, but the specific species involved and the underlying mechanisms remained largely unknown until now. A new study has found that Bacteroides vulgatus demonstrates a negative association with BMD, while serum valeric acid (VA) exhibits a…

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Bioinformatics Market is Set to Reach USD 28.6 Billion by

Richmond, Feb. 09, 2024 (GLOBE NEWSWIRE) — According to a research report “Bioinformatics Market”, by tools Type (BLAST, BioPerl, InterMine, Others), Services (Genome Sequencing, RNA sequencing, Metagenomic Analysis, Epigenomic, Others), Application (Drug discovery, Personalized medicine, Preventive medicine, Transcriptions, Metabolomics, Gene therapy, Others) Sectors (Medical Biotechnology, Animal Biotechnology, Plant Biotechnology, Environmental…

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Ubuntu Manpage: samtools-quickcheck – a rapid sanity check on input files

Provided by: samtools_1.19-1_amd64 NAME samtools-quickcheck – a rapid sanity check on input files SYNOPSIS samtools quickcheck [options] in.sam|in.bam|in.cram [ … ] DESCRIPTION Quickly check that input files appear to be intact. Checks that beginning of the file contains a valid header (all formats) containing at least one target sequence and…

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Create model – LAMMPS General Discussion

Dear LAMMPS users, I am constructing a model in LAMMPS using two approaches: (1) I create a supercell and then remove atoms from specific regions to form the final model, and (2) I directly construct the model and then fill it with unit cells. I am unable to explain why…

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Dead animal hat, automatic contender

The UFC has added a new contender to its illustrative flyweight roster. Mongolian fighter Nyamjargal Tumendemberel has signed a multi-fight deal with the UFC. Fight fans were definitely excited about this new addition to the UFC. Fighters like Brandon Moreno, Alexandre Pantoja, and Mohammed Mokaev will have a new threat…

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Remote Software Quality Engineer III – Bioinformatics Job at Natera

JOB TITLE: Software Quality Engineer III – Bioinformatics LOCATION: Remote, USA PRIMARY RESPONSIBILITIES: Perform software verification, define and execute test cases and scenarios required for software quality assurance and regulatory compliance. Perform system analysis, assess risk, and develop strong test strategies by analyzing product design and technical specifications, and by…

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Danaher Jobs – Principal Bioinformatics Scientist

At Cepheid, we are passionate about improving health care through fast, accurate diagnostic testing. Our mission drives us, every moment of every day, as we develop scalable, groundbreaking solutions to solve the world’s most complex health challenges. Our associates are involved in every stage of molecular diagnostics, from ideation to…

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How the Quantum World Can Help Scientists Engineer Biology

The Science Newswise — CRISPR-Cas is a tool that allows scientists to make targeted changes to an organism’s DNA. This tool consists of two parts. The first is a microscopic substance called a nuclease Cas protein (e.g., Cas9) that can cleave DNA. The second is an RNA molecule (also called…

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Merging multiple samples in Seurat

Hello! I am very recent to snRNAseq , however has recently started using Seurat to process the data I have available. This is more of a clarification that I have understood the tutorials appropriately. A breakdown of my data: I have snRNAseq data from diseased with mutation, diseased without mutation…

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Unveiling Roman Amphitheaters with a ggplot2 violin plot

[This article was first published on coding-the-past, and kindly contributed to R-bloggers]. (You can report issue about the content on this page here) Want to share your content on R-bloggers? click here if you have a blog, or here if you don’t. 1. What is a violin plot? A violin…

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kotlin – How to set addtionalProperties via OpenAPI 3.0 Java annotations?

My end goal is to simply have some generated OAS 3.0 documentation contain the size constraints on a Map<String, String> ‘s keys and values. This code will be in Kotlin, but it shouldn’t muddle the example too much: @RouterOperation( operation = Operation(operationId = “:POST/foo/bar”, requestBody = RequestBody( content = [Content(…

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Ubuntu Manpage: FastQC – high throughput sequence QC analysis tool

Provided by: fastqc_0.11.9+dfsg-5_all NAME FastQC – high throughput sequence QC analysis tool SYNOPSIS fastqc seqfile1 seqfile2 .. seqfileN fastqc [-o output dir] [–(no)extract] [-f fastq|bam|sam] [-c contaminant file] seqfile1 .. seqfileN DESCRIPTION FastQC reads a set of sequence files and produces from each one a quality control report consisting of…

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Data Analytics Lab Assignment: R Scripts, Analysis, and

COURSE: CIT466 Data AnalyticsLab 2 SPRING 2024 Dr. Feras AlObeidat This is a group assignmentthat will result in a report based on the below questions. There can be a maximum of three students in each group. This assignment will assess your understanding of all R lab sessions covered in course…

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Ubuntu Manpage: mash – fast genome and metagenome distance estimation using MinHash

Provided by: mash_2.3+dfsg-1build2_amd64 NAME mash – fast genome and metagenome distance estimation using MinHash SYNOPSIS mash <command> [options] [arguments …] DESCRIPTION mash is the main executable for the Mash software. The actual functionality is provided by the subtools (‘commands’): Commands bounds Print a table of Mash error bounds. dist Estimate…

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ZsGreen/Luciferase Safe-Harbor HEK293 Cell Line | BPS Bioscience

Product information “ZsGreen/Luciferase Safe-Harbor HEK293 Cell Line” Recombinant stable HEK293 cell line constitutively expressing ZsGreen (bright green fluorescent protein derived from Zoanthus sp. reef coral) and firefly luciferase, which have been stably integrated into the AAVS1 safe harbor locus on chromosome 19 using CRISPR/Cas9. Expression of ZsGreen and the luciferase…

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rust – Implement partially overlapping traits on polymorphic collection if members all implement trait?

I’ve got an AST structure for IR, and another for Data. Each of these consist of mostly the same types nodes, but each have some nodes which only belong in them. In general IR can contain logical operations like IfThenElse or function application, while Data has to be simpler records….

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PRSice and R lm() show different association analysis output (coefficient, SE and P)

PRSice and R lm() show different association analysis output (coefficient, SE and P) 0 Hey, I am struggling to understand Why am I getting different association analysis output (coefficient, SE and P) between PRSice and lm() function in R. Not only the values, even the direction of association is different….

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problem while importing single-end demultiplexed with quality data in qiime2 – Technical Support

MarinaZ (Marina) February 8, 2024, 11:01am 1 Hello, I’ve been experiencing the following error: (1/1?) No such option: –imput-path (Possible options: –input-path, –output-path)I have single-end demultiplexed with quality data and I’m trying to import them in qiime in order to create .qza file. The command that I used and gives…

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KEGG ORTHOLOGY: K06121

KEGG ORTHOLOGY: K06121     ORTHOLOGY: K06121 Help Entry K06121                      KO                                      Symbol dhbC Name glycerol dehydratase medium subunit [EC:4.2.1.30] Pathway Reaction R01047   glycerol hydro-lyase (3-hydroxypropanal-forming) Brite KEGG Orthology (KO) [BR:ko00001] 09100 Metabolism  09103 Lipid metabolism   00561 Glycerolipid metabolism    K06121  dhbC; glycerol dehydratase medium subunitEnzymes [BR:ko01000] 4. Lyases  4.2  Carbon-oxygen lyases   4.2.1  Hydro-lyases    4.2.1.30  glycerol dehydratase     K06121  dhbC; glycerol dehydratase medium subunit BRITE hierarchy Other DBs Genes…

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Imputing missing genotypes in –score

Does plink 2 impute missing genotypes with this pipe? plink2 –threads 1 \                –read-freq freq.afreq \                –vcf tube.vcf \                –score score_file.anno.plink2.tsv ignore-dup-ids \             …

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G7250D | Agilent

Please login to add product to your favorites. Part Number SureGuide sgRNA, 500ug, 90-120nt Add to Favorites + Create New list Item successfully added to your list Read more here: Source link

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[Kernel-packages] [Bug 1786013] Autopkgtest regression report (linux-meta-azure-5.15/5.15.0.1056.64~20.04.45)

All autopkgtests for the newly accepted linux-meta-azure-5.15 (5.15.0.1056.64~20.04.45) for focal have finished running. The following regressions have been reported in tests triggered by the package: systemd/245.4-4ubuntu3.23 (arm64) Please visit the excuses page listed below and investigate the failures, proceeding afterwards as per the StableReleaseUpdates policy regarding autopkgtest regressions [1]. people.canonical.com/~ubuntu-archive/proposed-

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Help creating BSgenome object for new canine and feline genomes?

Help creating BSgenome object for new canine and feline genomes? 2 @9deda875 Last seen 1 day ago United States Hello, I would like to create a new BSgenome object for these two genome builds: Canine genome: canfam4, also called UU_Cfam_GSD_1.0 Feline genome: fca126, also called F.catus_Fca126_mat1.0 Would someone be able…

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A Method to Obtain CTCs from Murine Colorectal Cancer Model

– Circulating Tumor Cells, or CTCs, are the cancer cells that stem from the primary tumor and enter the blood circulation. Most CTCs can survive in the bloodstream without attaching to the surface; therefore, we can detect them directly from the blood of most cancer patients. CTCs in the blood…

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python – Reading files asynchronously hangs within Pytorch Dataset when DataLoader.num_workers > 1

I’m training a classifier on raw-bytes in binary files. Each file can be several megabytes long. I have a dataset with several millions of binaries in it. Loading all this data at once and keeping it all in memory is very expensive, so I wanted to write an IterableDataset to…

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Shedding Light on BIA-ALCL Risks

In a society that celebrates individuality and self-expression, the journey to aesthetics takes many forms. One such road, taken by countless women seeking empowerment and confidence, is breast augmentation. This blog dives deep into the dark and flip side of breast augmentation- Allergan breast implant lawsuits. Before answering the query…

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Ubuntu Manpage: Bio::Roary::External::Makeblastdb – Wrapper around NCBIs makeblastdb command

Provided by: roary_3.13.0+dfsg-1_all NAME Bio::Roary::External::Makeblastdb – Wrapper around NCBIs makeblastdb command VERSION version 3.13.0 SYNOPSIS Take in a fasta file and create a temporary blast database. use Bio::Roary::External::Makeblastdb; my $blast_database= Bio::Roary::External::Makeblastdb->new( fasta_file => ‘contigs.fa’, exec => ‘makeblastdb’ ); $blast_database->run(); METHODS output_database Returns the path to the temporary blast database files…

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Huntington disease oligodendrocyte maturation deficits revealed by single-nucleus RNAseq are rescued by thiamine-biotin supplementation

dc.contributor.author Lim, Ryan G dc.contributor.author Al-Dalahmah, Osama dc.contributor.author Wu, Jie dc.contributor.author Gold, Maxwell P dc.contributor.author Reidling, Jack C dc.contributor.author Tang, Guomei dc.contributor.author Adam, Miriam dc.contributor.author Dansu, David K dc.contributor.author Park, Hye-Jin dc.contributor.author Casaccia, Patrizia dc.contributor.author Miramontes, Ricardo dc.contributor.author Reyes-Ortiz, Andrea M dc.contributor.author Lau, Alice dc.contributor.author Hickman, Richard A dc.contributor.author Khan,…

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Treating the Untreatable with Precision Therapies – A $4 trillion Opportunity?

Precision Therapies For Targeted Results Precision therapies have always been the ultimate goal of medicine. Instead of drugs acting on multiple parts of the body, these therapies would only target one organ, one cell, or even one gene. In theory, not only would this be a lot more efficient, but…

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Sperm-specific histone H1 in highly condensed sperm nucleus of Sargassum horneri

Cho, C. et al. Haploinsufficiency of protamine-1 or-2 causes infertility in mice. Nat. Genet. 28, 82–86 (2001). Article  CAS  PubMed  Google Scholar  Oliva, R. Protamines and male infertility. Hum. Reprod. Update 12, 417–435 (2006). Article  CAS  PubMed  Google Scholar  Balhorn, R. The protamine family of sperm nuclear proteins. Genome Biol….

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Enhancing malaria detection in resource-limited areas: A high-performance colorimetric LAMP assay for Plasmodium falciparum screening

Fig 2. The cLAMP specificity of the design (left panel) and reference (right panel) primer set. The plasmid DNA (pDNA) containing 18S rRNA genes from both the P. falciparum S-type (PfS) and A-type (PfA) were utilized to confirm primer specificity. A-type 18S rRNA genes from other Plasmodium species were also…

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Short tandem repeat mutations regulate gene expression in colorectal cancer

A novel STR panel for human protein-coding genes To explore STR mutations in CRC, we first annotated STRs in the introns, exons, and promoter sequence of all protein-coding genes in the GRCh38 reference genome (“Methods”). We discarded STR loci for which genotyping was expected to be inaccurate due to genomic…

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Bhubaneswar ILS scientists discover direct interaction of circular RNAs with mRNAs in gene expression

In an extremely proud moment for Odisha, a team of researchers at the prestigious Institute of Life Sciences (ILS) in Bhubaneswar has made a groundbreaking discovery that suggests the role of direct interaction of circRNAs with mRNAs in gene expression regulation. The findings represent a novel method for illuminating the…

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SMAD4 variants and its genotype-phenotype correlations to juvenile polyposis syndrome

Abstract BACKGROUND: Juvenile polyposis syndrome (JPS), a rare autosomal dominant syndrome, affects one per 100 000 births, increasing lifetime cancer risk by 9 – 50%. Around 40-60% of JPS cases are caused by disease-causing variants (DCV) in SMAD4 or BMPR1A genes, of which SMAD4 accounts for 20-30%. OBJECTIVES: To characterise…

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Activated FGFR2 signalling as a biomarker for selection of intrahepatic cholangiocarcinoma patients candidate to FGFR targeted therapies

FGFR inhibitors have been developed to inhibit FGFR activation and signal transduction; notwithstanding, currently the selection of intrahepatic cholangiocarcinoma (iCCA) patients for these drugs only relies on the detection of FGFR2 genetic alterations (GAs) in tumor tissues or circulating tumor DNAs, without concomitant assessment of FGFR2 signalling status. Accordingly, we…

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New strategy for safer CAR T cell therapy in lymphomas

Graphical Abstract. Credit: Cell Reports Medicine (2024). DOI: 10.1016/j.xcrm.2024.101421 In treating aggressive lymphomas and blood cancer (leukemia), chimeric antigen receptor T cells (CAR T cells) are increasingly being used. For this therapy, immune cells are taken from patients and programmed by means of genetic engineering to detect proteins in the…

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Faulty DNA disposal system causes inflammatio

image:  Endosomes (magenta) collect around mitochondria (blue) after infection with virus HSV-1, which attacks mtDNA (green) and causes its release. view more  Credit: Salk Institute LA JOLLA (February 8, 2024)—Cells in the human body contain power-generating mitochondria, each with their own mtDNA—a unique set of genetic instructions entirely separate from…

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Futurama: Hit & Run – Demo – Trailer 2 | Topic

Slurm Team youtu.be/o5MliascY_Q&#13; Futurama: Hit & Run the demo is set to release Late August – Early September! Not long now! Futurama: Hit & Run the demo is set to release Late August – Early September! Not long now! dimitarkol05 Great Trailer theALVA_YT2022 Hi! I’m a youtuber and I…

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Comparative mitochondrial genome brings insights to slight variation in gene proportion and large intergenic spacer and phylogenetic relationship of mudskipper species

Mitogenome organization, composition, and skewness The complete mitochondrial genome of B. dussumieri is (GenBank accession XX) 16,685 bp of length, which is similar to other mudskippers mitogenomes (16,470–17,243 bp) (Tables 1 and 2). The mitochondrial genome and the structure were also typical of the mudskipper species and with highly conservative sites, comprising…

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KEGG T01710: 100306272

Entry 100782702         CDS       T01710                                  Symbol COX2 Name (RefSeq) cytochrome c oxidase subunit 2, mitochondrial   KO K02261   cytochrome c oxidase subunit 2 Organism gmx  Glycine max (soybean) Pathway gmx00190   Oxidative phosphorylation gmx01100   Metabolic pathways Brite KEGG Orthology (KO) [BR:gmx00001] 09100 Metabolism  09102 Energy metabolism   00190 Oxidative phosphorylation    100782702 (COX2) 09180 Brite Hierarchies  09182 Protein families: genetic information processing   03029 Mitochondrial biogenesis…

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Vertex AI docker in docker: Cannot connect to the Docker daemon

So I am using kubeflow Containerized Python Components to create a Vertex AI training pipeline. As the last step of the pipeline, I would like to build and push a custom prediction container using a Custom Prediction Routine, with the newly trained model baked in. In the Dockerfile that creates…

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Georgian Wheat Culture Celebrated at International Conference

Tbilisi, Georgia: The Georgian Academy of Agricultural Sciences, the Ivane Javakhishvili State University, and the Agricultural Research Center hosted an international scientific conference on Georgian wheat culture on February 6 and 7, 2024. The conference aimed to protect and popularize Georgian wheat, a rich and diverse genetic resource and a part…

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mtDNA Cyclic Sequence Alignment CSAtool

mtDNA Cyclic Sequence Alignment CSAtool 1 Hi everyone, I encountered an issue while running CSAtool. This is my command and report: What’s free(): invalid next size (fast)? Maybe it’s due to the way I formatted the sequences? I hope you can help me. Thanks! mtDNA alignment CSA • 268 views…

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Antibiotics Increase Multi-Resistant, Pathogenic E.Coli Risk

After analysing 5,000 E. coli infections in Norway and Great Britain during the period 2001-2017, the results leave us in no doubt. In 2005, scientists showed for the very first time that the use of various antibiotics coincided with the occurrence of serious bacterial infections that were resistant to the…

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Variable Stiffness Particles using GRANULAR package – LAMMPS Beginners

owala February 9, 2024, 4:48pm 1 Hi all! I am hoping to simulate variable stiffness particles using the GRANULAR package. For example, I am simulating 5 grains, each of which should have a different stiffness. I am using a Hookean pair_style. I understand that I can define a spring stiffness…

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Umbrella Sampling using Cp2k

Dear all, I’m trying to carry out umbrella sampling for a dimeric system. My collective variable is center of mass to center of mass distance. The COLVAR and CONSTRAINT section is as follows. I’m getting different error with different modifications. Can anyone suggest me how to correct it ? Thanks…

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How to Analyze Coronavirus RNA with Python (Part 2: Installing Biopython) | by Proto Bioengineering | Feb, 2024

The Biopython logo Biopython is a set of tools for doing all sorts of genomics tasks: reading DNA and RNA, aligning sequences, analyzing similarities between sequences, and more. This is the second part in a series on analyzing coronavirus RNA with Python. Here we’ll install Biopython and use it to…

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Bioconductor – BioNERO

DOI: 10.18129/B9.bioc.BioNERO     This package is for version 3.15 of Bioconductor; for the stable, up-to-date release version, see BioNERO. Biological Network Reconstruction Omnibus Bioconductor version: 3.15 BioNERO aims to integrate all aspects of biological network inference in a single package, including data preprocessing, exploratory analyses, network inference, and analyses…

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Molecular Dynamics Software Market to Witness Revolutionary

Molecular Dynamics Software Market Global “Molecular Dynamics Software Market” Research report is an in-depth study of the market Analysis. Along with the most recent patterns and figures that uncovers a wide examination of the market offer. This report provides exhaustive coverage on geographical segmentation, latest demand scope, growth rate analysis…

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Fine-Tuning Models: Optuna for Hyperparameter Optimization | by Amit Kulkarni | Feb, 2024

We have a basic model with some data preprocessing. Let’s now try to improve the performance of the XGBoost model by tuning it further. There are two popular methods for parameter tuning Optuna and Gridsearch. We will focus on Optuna in this blog. X_train, X_test, y_train, y_test = train_test_split(X, y,…

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AlphaCRV: A Pipeline for Identifying Accurate Binder Topologies in Mass-Modeling with AlphaFold

Abstract The speed and accuracy of deep learning-based structure prediction algorithms makes it now possible to perform in silico pull-downs to identify protein-protein interactions at a proteome-wide scale. However, existing scoring algorithms struggle to accurately identify correct interactions at such a large scale, resulting in an excessive number of false…

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Boosting Immune Response with Non-Viral Gene Electrotransfer

A groundbreaking study published in Nature Cancer has unveiled a novel approach to tumor treatment. By leveraging local intratumor delivery with electroporation of low levels of plasmids encoding molecules, researchers have discovered an antitumor effect that does not result in systemic toxicity. Upregulating MHC-I and PD-L1: The Keys to Unlocking…

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Insight Global hiring Bioinformatics Software Engineer in Tennessee, United States

Job Description: 1) Use Nextflow to build bioinformatics pipelines that take FASTQ or BAM files as input and process them using bioinformatic tools. 2) Write Python/R scripts to process, summarize, and visualize outputs created by other tools. 3) Ensure that the pipeline is modular and flexible, with the ability to…

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PHS Biostatistics and Bioinformatics Seminar by Ben Lengerich, Postdoc and Alana Fellow, MIT Comp Sci and AI Lab & the Broad Institute

Presented by: Ben Lengerich, Postdoc and Alana Fellow, MIT Comp Sci and AI Lab & the Broad Institute In biomedical data analysis, an emerging trend focuses on contextualizing observations within biological and real-world processes. This approach facilitates high-resolution, context-specific insights by integrating information across datasets, moving beyond analyzing datasets in…

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AgBS: Post-Doctoral in Genomics and Bioinformatics (8991)

Mohammed VI Polytechnic University is an institution dedicated to research and innovation in Africa and aims to position itself among world-renowned universities in its fields The University is engaged in economic and human development and puts research and innovation at the forefront of African development. A mechanism that enables it…

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Better Strawberries Thanks to CRISPR Breakthrough

Netherlands-based company announces the inaugural regeneration of strawberries from gene-edited individual cells. Hudson River Biotechnology (HRB), headquartered in Wageningen, The Netherlands, announced the first successful regeneration of strawberry plants from gene-edited single cells, utilizing its unique CRISPR technology known as TiGER. The berry industry is currently facing challenges, transitioning from…

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Adonis2 inR

Adonis2 inR 0 When I plot my data set in ggplot, I get next to no separation of groups, yet when I run it with Adonis2, I get a p<0.05. What am I doing wrong? I did it before some time ago with a different data set. The difference now…

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Did COVID vaccines kill 14X more people than they saved?

Did a study just show that COVID-19 vaccines killed 14x more people than they saved?! Take a look at the viral claim, and find out what the facts really are!   Claim : COVID Vaccines Kill 14X More People Than They Saved! People are sharing an article (archive) by The…

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NetworkAnalyst

Starting from a list of gene IDs with optional expression values Starting from a single count table (RNAseq) or intensity table (microarray) Starting with several gene expression tables for meta-analysis Uploading raw RNAseq files (any species) for mapping & quantification Starting with a network file (sif, graphml, json) News &…

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2023 gene therapy research STAR Grant winners announced

At PacBio, enabling the promise of genomics to better human health cuts right to the core of everything we do.That’s why in 2023 we created the STAR (Student Travel Awarded Researcher) Grant program. This exciting funding opportunity is intended to assist up-and-coming researchers in genomics-aligned fields with sequencing services and…

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FASTQ to FASTA Converter

About the tool The FASTA format is a text-based format for representing nucleotide or peptide sequences. The FASTQ format additionally includes the corresponding quality scores. This tool allows you to convert FASTQ files to FASTA. The resulting FASTA file will contain only the sequence data from the input FASTQ file….

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Unlocking API Potential with OpenAPI

Unlocking API Potential with OpenAPI Table of Contents: Introduction What is Open API The Importance of API in Development Spec First API Design Using Open API for Documentation Tools for Generating Documentation Generating SDKs from Open API Specs Benefits of Leading with Open API Specs Examples of Open API Tools…

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what is in the pipeline?

According to the World Health Organization (WHO), around 50 million people worldwide have epilepsy, making it one of the most common neurological diseases globally. Although treatments are already available for the disease – which include narrow-spectrum anti-epileptic drugs (AEDs) to treat specific types of seizures, and broad-spectrum AEDs to treat…

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Special Episode 3: PhiX / UMIs / QC

Podcast: Explain Podcast Erschienen: 09.02.2024Dauer: 01:10:43 Getting the most out of Machines Chapters: 04:30 PhiX 14:30 low complexity 19:30 UMIs 32:10 FastQC 43:00 MultiQC 56:40 PycoQC PhiX concentrations for loading a validation run: knowledge.illumina.com/instrumentation/general/instrumentation-general-reference_material-list/000001536 Dnatech on why UMIs are used: dnatech.genomecenter.ucdavis.edu/faqs/what-are-umis-and-why-are-they-used-in-high-throughput-sequencing/ BMH learning on UMIs: www.youtube.com/watch?v=sRPMsnhIBK0 FastQC for QC of…

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CSRD compliance in biotech: is the industry ready?

The EU’s Corporate Sustainability Reporting Directive (CSRD), effective from the beginning of 2023, brings significant implications and challenges for the biotech industry. This directive aims to embed Environmental, Social, and Governance (ESG) elements as fundamental components of annual corporate reporting, necessitating a range of requirements and adjustments for companies in…

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Love Data Week begins Monday | E-News

Researchers and data enthusiasts are invited to join the celebration by attending a series of workshops beginning Monday (Feb. 12) through Feb. 16 that will offer valuable insight and skill building for those interested in working with data. Whether you are taking the initial steps in working with data or…

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Can gene therapy be the key to restoring hearing loss?

Gene therapy has had a number of success stories with regards to treating blood disorders like hemophilia and beta-thalassemia, as well as in cancer research. Now, the latest breakthrough in gene therapy has been in restoring hearing loss in an 11-year-old boy.  A team of scientists at the Children’s Hospital…

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Investors Sue BioVie (BIVI) After Potential Scientific

SAN FRANCISCO, Feb. 09, 2024 (GLOBE NEWSWIRE) — Hagens Berman urges BioVie Inc. (NASDAQ: BIVI) investors who suffered substantial losses to submit your losses now. Class Period: Aug. 5, 2021 – Nov. 29, 2023Lead Plaintiff Deadline: Mar. 19, 2024Visit: www.hbsslaw.com/investor-fraud/BIVI Contact An Attorney Now: BIVI@hbsslaw.com          …

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This new approach could revolutionize knee osteoarthritis treatment

BioSenic, a clinical-stage Belgian-headquartered company specializing in serious autoimmune and inflammatory diseases and cell therapy, will be sharing data on its late-clinical asset JTA-004 for the treatment of knee osteoarthritis at the Osteoarthritis Research Society International (OARSI) World Congress 2024. The event takes place in Vienna, Austria, from April 18…

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Gene editing biotech Metagenomi prices IPO at $15, the low end of the range

Metagenomi, a preclinical biotech using metagenomics-derived genome editing, raised $94 million by offering 6.3 million shares at $15, the low end of the range of $15 to $17. Metagenomi is a precision genetic medicines company developing curative therapeutics using its proprietary, comprehensive metagenomics-derived genome editing toolbox. Its toolbox includes…

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5 hot biotechnology careers skyrocketing in demand

With many exciting discoveries to make and new problems to solve, the biotechnology industry provides many career opportunities that could make a difference in people’s lives. So, if you are searching for a career in the field, we have listed five biotechnology careers that are currently in high demand, and…

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Sutro Biopharma Inc at Wells Fargo Healthcare Conference Transcr

Sep 09, 2022 / 02:25PM GMTJames John Shin – Wells Fargo Securities, LLC, Research Division – Associate Equity Analyst Good morning, everyone. Thanks for being here. My name is James Shin. I’m one of the biotech analyst at Wells Fargo. Today, I’m joined up here with the CEO of Sutro…

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what will therapy look like in 2034?

Drugs like PARP inhibitors and chimeric antigen receptor (CAR) therapies, and advancements in artificial intelligence in drug discovery, have spurred hope for improved cancer care in the past year. Rigorous research has paved the way for a declining cancer death rate – by 33% to be precise – since the…

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Twisted DNA Increases CRISPR Off-target Effects

At the end of 2023, the FDA approved Casgevy for sickle cell disease, its first approval for a therapeutic that used the genome editing tool clustered regulatory interspaced palindromic repeats (CRISPR) to specifically inactivate a human gene as a treatment for a genetic disease. While CRISPR-based gene therapies could potentially…

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16 UK biotech companies you should know about

The UK is home to several biotech hubs, including the famous ‘golden triangle’, made up of Oxford, Cambridge, and London. In fact, after a $700 million surge in funding in the third quarter of 2023, the UK biotech scene is now one of the most vibrant in Europe, laying the…

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Investigation of the Flipping Dynamics of 1, N6-Ethenoadenine in Alkyladenine DNA Glycosylase

dataset posted on 2024-02-09, 02:43 authored by Bin Liu, Yanping Qi, Xiaowei Wang, Xin Gao, Yuan Yao, Lu Zhang Alkyladenine DNA glycosylase (AAG) is an essential enzyme responsible for maintaining genome integrity by repairing several DNA lesions damaged by alkylation or deamination. Understanding how it can recognize and excise the…

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The biggest private biotech investments in January 2024

The companies Jixing Pharmaceuticals, COUR Pharmaceuticals, and OnCusp Therapeutics bagged the biggest private biotech investments in January 2024. Around the world, immunology, oncology, and drug discovery players attracted the biggest funding rounds overall.  The first month of 2024 saw a lot of initial public offering (IPO) success stories, suggesting a…

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Advancements in CRISPR-Based Pathogen Detection: Limitations and Recent Progress

Gene editing technologies, particularly those based on Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR), have revolutionized our ability to accurately and swiftly detect pathogens. However, even these advanced methods have their limitations. This article explores these limitations and highlights recent advancements that are paving the way for faster, more accurate…

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Top antibody-drug conjugate (ADC) companies leading the industry

The antibody-drug conjugate (ADC) field is witnessing an expansion in the variety of conjugation techniques, linker chemistry, and payloads being used, moving beyond traditional tubulin inhibitors to include novel mechanisms of action. Investments in ADC research continue to grow, with significant funding rounds and acquisitions. For example, Novo Holdings’ $105…

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Recombinant Human Serpin E1, Transfected HEK293 Overexpression Cell Culture Supernatant

Recombinant Human Serpin E1, Transfected HEK293 Overexpression Cell Culture Supernatant | RayBiotech The store will not work correctly in the case when cookies are disabled. JavaScript seems to be disabled in your browser. For the best experience on our site, be sure to turn on…

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The promising horizon of hair loss treatments

There hasn’t been a lot of hair loss treatment progress in the last twenty years. However several biotech companies are hot on the case and are getting tantalizingly close to the breakthrough that many patients hope for. With body dysmorphia magnified by the omnipresent digital world, psychiatrists have increasingly linked…

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Unveiling tomorrow’s cures: insights from Cardinal Health

This week on the podcast, we have a conversation with Fran Gregory, vice president of Emerging Therapies at Cardinal Health.  The discussion covers the company’s role in healthcare, biosimilars, the latest in cell and gene therapies, and Advanced Therapies Week. About Cardinal Health Cardinal Health is a distributor of pharmaceuticals…

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Biotech job market 2024: what to expect?

The past year saw a string of pipeline cuts and downsizing plans strike the biotech job market. Have layoffs spooked young professionals looking for a way into the industry, and does the employment landscape seem to be looking up this year? Employment in the life sciences industry had hit a…

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Buy Slurm Bottle Cap style pin #Futurama #MadeInUSA Online at desertcart Antigua and Barbuda

Disclaimer: The price shown above includes all applicable taxes and fees. The information provided above is for reference purposes only. Products may go out of stock and delivery estimates may change at any time. desertcart does not validate any claims made in the product descriptions above. For additional information, please…

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Joe Puliadi | Google Cloud Skills Boost

Joe Puliadi | Google Cloud Skills Boost Join Sign in Member since 2022 Gold League 9440 points Create Image Captioning Models Earned Dec 2, 2023 EST Transformer Models and BERT Model Earned Dec 2, 2023 EST Encoder-Decoder Architecture Earned Dec 2, 2023 EST Attention Mechanism Earned Dec 2, 2023 EST…

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Chinese Scientist Filed Covid Sequence Weeks Before Official Release: Report

Beijing: A Chinese scientist sought to publish the genetic profile of the coronavirus two weeks before Beijing formally released the sequence, as per federal documents shared with a US congressional committee and released on Wednesday, The Washington Post reported. The delay may have slowed researchers’ work on tests, treatments, and…

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Three nabbed after discovery of skeletal remains believed to be Bella

BATU PAHAT: Three men were arrested following the discovery of the skeletal remains of a woman believed to be Mira Sharmila Samsusah, the single mother also known as Bella, who was reported missing more than a month ago. Batu Pahat OCPD Asst Comm Ismail Dollah said the three suspects, aged…

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Error in neigh_modify configuration – LAMMPS Beginners

Dear community of LAMMPS users I am simulating a complex system consisting of a biomolecule (1876 atoms), a nantube of an oxide (4200 atoms) and a box of water (30000 atoms) and I get the following error: ERROR on proc 0: Neighbor list overflow, boost neigh_modify one (src/npair_half_bin_newton.cpp:156) I am…

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Pomerantz Law Firm Announces the Filing of a Class Action

NEW YORK, Jan. 19, 2024 (GLOBE NEWSWIRE) — Pomerantz LLP announces that a class action lawsuit has been filed against AlloVir, Inc. (“AlloVir” or the “Company”) (NASDAQ: ALVR). The class action, filed in the United States District Court for the District of Massachusetts, and docketed under 24-cv-10152, is on behalf of…

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