Tag: shell

Job Details Auckland, Auckland, New Zealand Netvalue Ltd Posted 1 day ago Want updates for this and similar Jobs? This advertiser has chosen not to accept applicants from your region. Full Job Description Bioinformatics Developer (Intermediate to Senior) Bioinformatics Developer (Intermediate to Senior) 15 openings But enough about us, what…

Description gmx solvate can do one of 2 things: 1) Generate a box of solvent. Specify -cs and -box. Or specify -cs and -cp with a structure file with a box, but without atoms. 2) Solvate a solute configuration, e.g. a protein, in a bath of solvent molecules. Specify -cp…

In a society that celebrates individuality and self-expression, the journey to aesthetics takes many forms. One such road, taken by countless women seeking empowerment and confidence, is breast augmentation. This blog dives deep into the dark and flip side of breast augmentation- Allergan breast implant lawsuits. Before answering the query…

Cell proliferation and aggregation dynamics modeling The aggregation process is characterized by the dynamic evolution of a density profile of aggregates. Let \(\phi (x,t)\) denote the average number of aggregates or clusters of size \(x\) (i.e., mass and volume) at time \(t\), where mass is equal to a buoyant density…

Eligo Bioscience is a gene-editing company focused on addressing diseases driven by the expression of bacterial genes from the microbiome, and in its crosshairs, initially, is moderate to severe acne vulgaris, an inflammatory disease that affects about 3% of the global population. This week, we talk to Xavier Duportet, CEO…

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AMD Ryzen 9 5900X 12-Core testing with a ASUS TUF GAMING B550M-PLUS (WI-FI) (1801 BIOS) and MSI NVIDIA GeForce RTX 3080 10GB on Ubuntu 22.04 via the Phoronix Test Suite. Compare your own system(s) to this result file with the Phoronix Test Suite by running the command: phoronix-test-suite benchmark 2312292-NE-PYTORCHAL51…

extract sequence from genome by region 2 fasta • 277 views • link updated 1 hour ago by Ram 42k • written 6 hours ago by gernophil ▴ 40 you can integrate Bioio in Python by using subprocess module. subprocess is a built-in Python module. here is an example: import…

Job Description Who we are Genomines is a young biotechnology company based in Paris and Saclay, specialized in sustainable extraction of Nickel from plants. The mission of Genomines is to usher in a new era of sustainable mining by using genetically enhanced plants to extract metals from soil (agromining). Through…

Job Title: Sr. Software Engineer in Test (Bioinformatics or Data Sciences) Location: Mississauga, CAD Pay Rate: DOE   Requirements: B.S. or M.S. in Computer Science, Data Sciences, Bioinformatics, Biomedical engineering or equivalent field 5+ years of experience in software development or software test engineering or data engineering Proficiency in Python,…

Job Title: Sr. Software Engineer in Test (Bioinformatics or Data Sciences) Location: Mississauga, CAD Impact Healthcare Roche Sequencing is not only changing science, but we are changing lives. Our software teams are laying the groundwork for the future by developing powerful bioinformatics algorithms, data analysis tools, and software/systems infrastructures so…

Introduction In recent years, recombinant adenoviral vectors have been used in different fields of biomedical sciences such as in vitro and in vivo gene transfer, vaccine development, and gene therapy (Russell, 2000; Mitani and Kubo, 2002). Multiple features of recombinant adenoviral vectors such as high packaging capacity for transgene insertion,…

Google has recently announced the Gemini AI, along with Imagen 2 and Duet AU for developers. These can be used to develop tools and integrate them into their products and services. All of these are available with Gemini, Imagen 2, and Duet AI on Vertex AI (Google Cloud API solution…

You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: y…@freebsd.org Log URL: pkg-status.freebsd.org/ampere3/data/132releng-armv7-default/1dd4264fe4a8/logs/py39-pytorch-2.1.1_1.log Build URL: pkg-status.freebsd.org/ampere3/build.html?mastername=132releng-armv7-default&build=1dd4264fe4a8 Log: =>> Building misc/py-pytorch build started at Tue Dec 19…

Job Title: Sr. Software Engineer in Test (Bioinformatics or Data Sciences) Remote Description: Responsibilities: •         Implement and maintain an end-to-end automation test framework for running UI integration tests and quality dashboards using various tools: Java, JavaScript/TypeScript, Cypress, Selenium WebDriver, Cucumber, TestNG, Junit •         Design and develop requirements based test cases •         Implement automated…

Home Sweet Home Photo by Nancy Andrews Victorian builders used “gingerbread trim”—fancifully cut and pierced frieze boards, scrolled brackets, sawn balusters, and braced arches—to transform simple frame cottages into one-of-a-kind homes. Carpenter Gothic Photo by Nancy Andrews North America’s romance with gingerbread trim dates to the 1830s and ’40s, when…

Details Posted: 17-Dec-23 Location: Seattle, Washington Type: Full-time Salary: Open Overview Fred Hutchinson Cancer Center is an independent, nonprofit organization providing adult cancer treatment and groundbreaking research focused on cancer and infectious diseases. Based in Seattle, Fred Hutch is the only National Cancer Institute-designated cancer center in Washington. With a…

News:Unix and Shell Scripting for Bioinformatics course 0 Dear all, There are still a few seats available for our online course on Unix and Shell Scripting for Bioinformatics! Dates: 15-19 January 2024 Course Overview: Dive into the world of high-throughput biology Master essential Unix commands for data analysis Connect to…

eXtremeRate Regular price $15.99 Regular price Sale price $15.99 Unit price /  per  Sale Sold out Couldn’t load pickup availability Refresh We know that your controller shell is more than just a plastic accessory.It is your sidekick, your wing man, your battle buddy.This is why we use only the best…

Hi all!  So I’m trying to use mbedTLS methods in my project. I got it to work on SDK v1.9.0 but when upgrading to v.2.4.0 I get  a lot of “undefined references” to methods regarding mbedTLS.I see that there is some other issues regarding this but those haven’t solved my…

Kim Kardashian showcased her jaw-dropping physique in a figure-hugging black dress while attending Justin Timberlake‘s invite-only show at the Fontainebleau in Las Vegas. While enjoying a girls’ night out with her sister Kendall Jenner and longtime pal, Ivanka Trump, on Wednesday, the reality star, 43, commanded attention in her sexy knitted frock,…

Welcome to What’s New in AI, our weekly update where we bring you all the latest AI news, tools, and tips to help you excel in this new brave new AI-driven world. AI in the news: Google dominates once again Last week Google was in the news for the release…

Location: St Mary’s, Paddington and South Kensington Campus Job Summary Applications are invited for the post of Research Associate/Fellow in Bioinformatics and Precision Medicine within the Department of Infectious Disease, Faculty of Medicine. You will lead analysis -omic datasets generated from clinical studies of acute infection to inform disease diagnosis…

The National Weather Service in Miami issued a flood watch Wednesday for large parts of South Florida while forecasters warned gusty winds plaguing the region over the next several days could blow away your holiday decorations. Flooding is possible in the coastal and metropolitan areas of Miami-Dade, Broward and Palm…

Title: QA Analyst with Bioinformatics Work location: Mississauga, Canada (Hybrid) Duration: 1 Year Plus Contract Job Description: B.S. or M.S. in Computer Science, Data Sciences, Bioinformatics, Biomedical engineering or equivalent field • Min 5 years of experience in software development or software test engineering or data engineering • Proficiency in…

Snakemake rule error 0 I have the following rule in snakemake: rule low_coverage_contig_reads: input: bam=”data/processed/bam_files/bam/{sample}_{fraction}.bam.bai”, output: r1=”data/processed/clean_reads/low_cov/low_cov_{sample}_{fraction}_R1.fq.gz”, r2=”data/processed/clean_reads/low_cov/low_cov_{sample}_{fraction}_R2.fq.gz” threads: 8 params: bam=”data/processed/bam_files/bam/{sample}_{fraction}.bam” log: log1=”logs/{sample}_{fraction}_low_coverage_reads.log”, shell: “”” (samtools coverage {params.bam} | awk ‘NR > 1 && $7 < 10 {{print $1}}’ | tr ‘\\n’ ‘ ‘ | samtools view -u {params.bam}…

How to input list into GenomicsDBImport with snakemake? 0 Hello! I’m currently writing a pipeline with snakemake for exome data. During joint variant calling I need to use GATK’s GenomicsDBImport, although I’m unsure how to input all the samples at once. Here’s the simplified version of the rule I’m using:…

SENIOR TECHNICAL MARKETING MANAGER CYBER SECURITY is a big deal. It’s in the news, growing rapidly, a critical tool for every company, and our specialty. Imperva is a public company (NASDAQ) and cybersecurity leader that delivers best-in-class solutions to protect data and applications on-premises, in the cloud, and across hybrid…

As a business journalism publication, BioSpace doesn’t get many news days like we had on Friday. Not just one but two major FDA approvals happened simultaneously for the first cell-based gene therapies to treat patients with sickle cell disease.    While the FDA’s decision regarding Vertex Pharmaceuticals and CRISPR Therapeutics’…

GROMACS version: 2023.3GROMACS modification: No Hi folks I know that there have been several threads on running Gromacs with Apple M1 and M1 or M2 chips (e.g. Error compiling Gromacs 2023’s checks on Mac M2), but I recently got a MacBook Pro with the M3 chip, so I was interested…

Last updated: Thu Dec 7 16:28:19 2023 Intro Databricks Connect enables the interaction with Spark clusters remotely. It is based on Spark Connect, which enables remote connectivity thanks to its new decoupled client-server architecture. This allows users to interact with the Spark cluster without having to run the jobs from…

SalaryResearch Assistant: £31,396 to £32,982 per annum Research Associate: £33,996 per annum Newcastle University is a great place to work, with excellent benefits . We have a generous holiday package; plus the opportunity to buy more, great pension schemes and a number of health and wellbeing initiatives to support you….

Company description: We are a world class research-intensive university. We deliver teaching and learning of the highest quality. We play a leading role in economic, social and cultural development of the North East of England. Attracting and retaining high-calibre people is fundamental to our continued success. Job description: The Role…

PARIS: An investigation by Agence France-Presse into the strike in southern Lebanon on October 13 that killed a Reuters journalist and injured six others, including two from AFP, points to a tank shell only used by the Israeli army in this high-tension border region.Two strikes hit the group of journalists…

get gene name from rsID 1 I’ve got a list of rs IDs in xlsx format. I need to get the gene name for each rsID. When I use this command, I get the gene name esearch -db snp -query “rs573455” | esummary | xtract -pattern GENE_E -element NAME |…

My family isn’t huge on Christmas music, but we all have our favorites that get played around the holidays. We are huge Caniacs, and we have a favorite Hurricane. Why not pair these up and see what happens? Seth Jarvis- Merry Christmas From The Family by Robery Earl Keen. REK…

At Lilly, we unite caring with discovery to make life better for people around the world. We are a global healthcare leader headquartered in Indianapolis, Indiana. Our employees around the world work to discover and bring life-changing medicines to those who need them, improve the understanding and management of disease,…

!mkdir -p ~/.kaggle!cp kaggle.json ~/.kaggle/ 1. About !mkdir -p ~/ .kaggle !mkdir -p ~/.kaggle: This line uses the mkdir command to create a directory named .kaggle in the user’s home directory (~). The -p option ensures that the command creates parent directories as needed. This command is used to make…

Corteva, Inc. is a major American agricultural chemical and seed company that was the agricultural unit of DowDuPont prior to being spun off as an independent public company. DowDuPont announced the Corteva name in February 2018. As the world’s only major agriscience company completely dedicated to agriculture, we’re building a…

Today we have run into the task of having to split strand specific RNA-Seq data by strand and we had to make an effort to get it right (hopefully it is right). Maybe there is even an easier way to do it. The Illumina strand specific protocol is such that…

I am trying to implement a model where the forward function calls to an external function that computes the values using the model’s parametes. class R_model(torch.nn.Module): def __init__(self,) : super().__init__() self.Kx = torch.nn.Parameter(torch.randint(-200, -100, (1,)).float()*0.0001) self.Ky = torch.nn.Parameter(torch.randint(-200, -100, (1,)).float()*0.0001) self.Kz = torch.nn.Parameter(torch.randint(-200, -100, (1,)).float()*0.0001) def forward(self): return generate_r(Kx=self.Kx, Ky=self.Ky,…

Package: sagemathVersion: 9.5-6Severity: importantFile: /usr/bin/sage Dear Maintainer, I can’t start sage on console. Starting it, I get the following: $ sage┌────────────────────────────────────────────────────────────────────┐│ SageMath version 9.5, Release Date: 2022-01-30 ││ Using Python 3.11.6. Type “help()” for help. │└────────────────────────────────────────────────────────────────────┘ Error in sys.excepthook:Traceback (most recent call last):File “/usr/lib/python3.11/pathlib.py”, line 1251, in is_dirreturn S_ISDIR(self.stat().st_mode)^^^^^^^^^AttributeError: ‘str’…

In this tutorial, we’ll build a Recurrent Neural Network (RNN) in PyTorch that will classify people’s names by their languages. We assume that the reader has a basic understanding of PyTorch and machine learning in Python. At the end of this tutorial, we’ll be able to predict the language of…

You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: y…@freebsd.org Log URL: pkg-status.freebsd.org/foul2/data/140releng-powerpc64le-quarterly/84b4661ec108/logs/py39-pytorch-2.0.1.log Build URL: pkg-status.freebsd.org/foul2/build.html?mastername=140releng-powerpc64le-quarterly&build=84b4661ec108 Log: =>> Building misc/py-pytorch build started at Sun Dec 3…

You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: y…@freebsd.org Log URL: pkg-status.freebsd.org/foul2/data/140releng-powerpc64le-quarterly/84b4661ec108/logs/cytoscape-3.6.1.log Build URL: pkg-status.freebsd.org/foul2/build.html?mastername=140releng-powerpc64le-quarterly&build=84b4661ec108 Log: =>> Building biology/cytoscape build started at Sat Dec 2…

Is seems the container fails to boot. From a bad run: 9109s autopkgtest [10:39:17]: test tests-in-lxd: [———————– 9145s 2023-11-28T10:39:50Z INFO Waiting for automatic snapd restart… 9259s lxd 5.19-8635f82 from Canonical** installed 9288s Creating autopkgtest-prepare-jhI 9475s Retrieving image: metadata: 100% (323.81MB/s) Retrieving image: rootfs: 1% (3.53MB/s) <SNIP> Retrieving image: rootfs: 100%…

I am just beginning to learn R and have built up an RStudio Server by WSL (Ubuntu 22.04.2)(yes, my PC is on Win11 and just want to use Unix environment). So here it is, I tried to download some packages by devtools::install_github(), yet the console simply showed: Error: Failed to…

To stop a Vertex AI batch prediction job, you can follow these steps: Google Cloud Console: Go to the Google Cloud Console: console.cloud.google.com/. Navigate to the Vertex AI section or AI Platform (if you’re using an older version). Look for the batch prediction job you want to stop. Stopping the…

Publications on sugarcane have increased exponentially since 2006 worldwide, and Brazil has had more articles published on the topic than any other country in the period, according to a review in BioEnergy Research. The number of articles on the subject averaged about five per year between 1999 and 2006 but…

Job Description Tome Biosciences is the programmable gene insertion company. Using CRISPR, our technologies allow us to insert any genetic sequence of any size at any location into any genome. We are writing the final chapter in genomic medicines, delivering cures to patients through cell and genome engineering. Tome is…

You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: y…@freebsd.org Log URL: pkg-status.freebsd.org/foul2/data/main-powerpc64le-default/p5b346a1c0cc2_sfb51ddb20d/logs/py39-pytorch-2.1.1.log Build URL: pkg-status.freebsd.org/foul2/build.html?mastername=main-powerpc64le-default&build=p5b346a1c0cc2_sfb51ddb20d Log: =>> Building misc/py-pytorch build started at Fri Nov 24…

Required Qualifications: • A PhD degree in related field (Bioinformatics, Computer Science, Statistics, etc.) obtained in the last 1~2 years.• Strong quantitative data analysis background (machine learning, biostatistics, etc.) and/or computational genomics/genetics experiences (spatial transcriptomics, single-cell sequencing, high-throughput omics sequencing data analysis, TWAS/GWAS, etc.) or other relevant areas.• Strong…

I am struggling to understand how snakemake submits jobs to slurm. When I have a basic slurm sbatch script I usually add a line, such as #SBATCH –mem=5Gto determine that slurm may use 5 gigabytes (and no more) of memory. Now, I am using snakemake together with slurm with snakemake…

Vertex Review Welcome to the Vertex Review blog post. Vertex is for those who are still lagging behind in the video marketing era. Vertex can do it all for you without having to record a video yourself, use a video editor, and show your face on camera. The world’s first…

TensorFlow, TensorFlow-Metal, and PyTorch are powerful deep learning frameworks widely used in various applications. To effectively manage these frameworks and their dependencies, it’s recommended to work within a virtual environment. A virtual environment isolates the project’s dependencies from the global Python environment, preventing conflicts and ensuring compatibility. This article provides…

You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: y…@freebsd.org Log URL: pkg-status.freebsd.org/beefy16/data/132amd64-default/5b346a1c0cc2/logs/votca-2023.log Build URL: pkg-status.freebsd.org/beefy16/build.html?mastername=132amd64-default&build=5b346a1c0cc2 Log: =>> Building science/votca build started at Tue Nov 21…

R-Studio is a family of powerful and cost-effective data recovery and undelete utilities. Empowered by the new unique data recovery technologies, it is the most comprehensive solution for data recovery from FAT12/16/32, NTFS, NTFS5 (created or updated by Windows 2000), and Ext2FS (LINUX file system) partitions. It functions on local…

Field: Choose…EMDB IDTitleAuthorORCIDEM methodCurrent statusDeposition dateRelease dateDeposition siteLast processing siteFitted modelsRaw dataResolutionResolution methodSoftwareLigand nameComplex nameDomain nameDrug nameGO term nameInterPro term nameChEBI term nameExternal reference Publication titlePublication yearJournalPublication author Sample typeSample nameOrganismOrganism (NCBI code)StrainOrganTissueCellOrganelleCellular LocationE.C. numberMolecular Weight methodMolecular Weight (Da)Recombinant ExpressionRecombinant organismRecombinant organism (NCBI code)Recombinant strainRecombinant expression cellRecombinant expression plasmidDNA/RNA classificationDNA/RNA…

The Biostar Herald publishes user submitted links of bioinformatics relevance. It aims to provide a summary of interesting and relevant information you may have missed. You too can submit links here. This edition of the Herald was brought to you by contribution from Istvan Albert, and was edited by Istvan…

How to obtain full alignment results? 0 Hi, When I prepare to align my short reads to the human pan-genome graph genome, the result is only a path, 1. what I want is to provide me all the sequences that have a mismatch and full alignment with this reads? And…

You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: y…@freebsd.org Log URL: pkg-status.freebsd.org/ampere3/data/140releng-armv7-default/d5268d5f7157/logs/py39-pytorch-2.1.0.log Build URL: pkg-status.freebsd.org/ampere3/build.html?mastername=140releng-armv7-default&build=d5268d5f7157 Log: =>> Building misc/py-pytorch build started at Sun Nov 19…

Field: Choose…EMDB IDTitleAuthorORCIDEM methodCurrent statusDeposition dateRelease dateDeposition siteLast processing siteFitted modelsRaw dataResolutionResolution methodSoftwareLigand nameComplex nameDomain nameDrug nameGO term nameInterPro term nameChEBI term nameExternal reference Publication titlePublication yearJournalPublication author Sample typeSample nameOrganismOrganism (NCBI code)StrainOrganTissueCellOrganelleCellular LocationE.C. numberMolecular Weight methodMolecular Weight (Da)Recombinant ExpressionRecombinant organismRecombinant organism (NCBI code)Recombinant strainRecombinant expression cellRecombinant expression plasmidDNA/RNA classificationDNA/RNA…

What if the work you did every day could impact the lives of people you know? Or all of humanity? At Illumina, we are expanding access to genomic technology to realize health equity for billions of people around the world. Our efforts enable life-changing discoveries that are transforming human…

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Package: slurmctld Version: 22.05.8-4+deb12u1 Severity: normal Tags: patch X-Debbugs-Cc: alois.schlo…@gmail.com Dear Maintainer,    After migrating the slurmctld from debian11/slurm20 to a host with debian12/slurm22,    /var/log/slurm/slurmctld.log was rotated at midnight, to /var/log/slurm/slurmctld.log.1.gz    but no /var/log/slurm/slurmctld.log was generated.    syslog of logrotate showed this log message:    2023-11-17T00:00:01.825407+01:00 l74 logrotate[3441040]:…

I have been having issue getting my primers to match the expected output. For instance the bases of the first primer starting on the left are off by 4 base pairs to the right of the correct position. This is what I am suppose to get: ttggcagttgggaccgttta This is what…

I’m trying to figure out how to genotype an SNP at a particular position. Honestly I’m not sure what that means, but here are the instructions: “The idea is that the user wants to genotype a SNP at a particular position. To do this they will need to amplify a…

Company Description The Linux Foundation is a driving force in fostering open-source collaboration and supporting communities across a range of projects, including PyTorch. We’re dedicated to enhancing and expanding our infrastructure to meet the growing demands of PyTorch and related AI projects. We are seeking a Senior Cloud Operations Engineer…

hRRM2B mutagenesis study The fatal consequences of N221S mutation7 led to a thorough investigation of the impacts of N221 side chain, a conserved residue in RNR small subunit. Site-directed mutagenesis studies involving six N221 constructs were performed to elucidate the molecular mechanism of N221S related MDDS. The mutations were designed…

On a Windows machine, I have WSL2 installed and working. I believe I can use the WSL2 shell as my terminal in RStudio desktop (note, I am not trying to run RStudio in WSL2, at least not yet). However, although I have seen screenshots where WSL bash appears as an…

Breast implants are medical devices used to increase the size, shape, or fullness of a woman’s breasts. Lymphoma is a type of cancer that begins in the lymphatic system. While there have been some reports of a potential association between breast implants and lymphoma, research has not established a definitive…

Abstract Opioids produce addictive, analgesic, and euphoric effects via actions at mu opioid receptors (μORs). The μOR is encoded by the Oprm1 gene and is expressed in multiple brain regions that regulate reward and motivation, such as the nucleus accumbens (NAc). Oprm1 expression in NAc medium spiny neurons (MSNs) mediates…

You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: y…@freebsd.org Log URL: pkg-status.freebsd.org/ampere3/data/132arm64-default/d5268d5f7157/logs/votca-2022.1_1.log Build URL: pkg-status.freebsd.org/ampere3/build.html?mastername=132arm64-default&build=d5268d5f7157 Log: =>> Building science/votca build started at Fri Nov 10…

Chip Seraphine writes: > Hello, > > Our users submit their jobs from shared submit hosts, and have > expressed an understandable preference for being able to submit > directly from their own workstations. The obvious solution > (installing the slurm client on their workstations, or providing a > container that does something similar) are not…

St. Jude Children’s Research Hospital is looking for a highly motivated Senior Bioinformatics Analyst/Bioinformatic Analyst to contribute to genetic research projects in the Department of Epidemiology and Cancer Control. Our research leverages comprehensive biomedical data from childhood cancer survivors participating in two world-leading cohort studies, CCSS (ccss.stjude.org/ ) and SJLIFE…

Magic Castle, developed by the Digital Research Alliance of Canada (formerly Compute Canada), is a terraform template to deploy a virtual slurm cluster. This template has been adapted to launch easily in CACAO. Pre-requisites You will need to setup the following before you deploy any cloud resource using CACAO: Jetstream…

If you would like a little helping hand when coding your very first app or next generation phone or web application. You might be interested to know that Google’s Duet AI can help you. By providing coding assistance during the creation process and can be integrated into your favorite IDE….

Bengaluru: Microsoft owned code-hosting platform GitHub has added 3.5 million Indian developers taking the total tally to 13.2 million in 2023. India is one of the fastest-growing developer communities globally showing a significant jump from 9.7 million developers on the Github platform last year.With 13.2 million developers, India is expected…

Field: Choose…EMDB IDTitleAuthorORCIDEM methodCurrent statusDeposition dateRelease dateDeposition siteLast processing siteFitted modelsRaw dataResolutionResolution methodSoftwareLigand nameComplex nameDomain nameDrug nameGO term nameInterPro term nameChEBI term nameExternal reference Publication titlePublication yearJournalPublication author Sample typeSample nameOrganismOrganism (NCBI code)StrainOrganTissueCellOrganelleCellular LocationE.C. numberMolecular Weight methodMolecular Weight (Da)Recombinant ExpressionRecombinant organismRecombinant organism (NCBI code)Recombinant strainRecombinant expression cellRecombinant expression plasmidDNA/RNA classificationDNA/RNA…

Author : Karuna Nadadur Co Author : Murali Gandhirajan Healthcare Delivery is undergoing rapid changes and evolution as health systems and clinics adopt digital technologies to effectively serve patients. As digital technologies get widely deployed in the patient care delivery ecosystem, it generates vast amounts of patient data. Most of…

I have an .exe that’s meant to be called from the terminal/command line, and I want to use R to generate the program calls, iterate over different arguments, measure timings, capture output, and so forth. The executable is whisper-standalone-win. From windows command line (cmd.exe), after cd‘ing to the executable, we…

Hi there, First of all, apologies for the rather verbose email. Newbie here, wanting to set up a minimal slurm cluster on Debian 12.  I installed slurm-wlm (22.05.8) on the head node and slurmd (also 22.05.8) on the compute node via apt. I have one head, one compute node, and…

Source: bedtools Version: 2.31.0+dfsg-1 Severity: serious Tags: ftbfs Justification: ftbfs Dear Maintainer, While making a routine metadata update on a Debian patch against bedtools, Salsa CI caught a build failure on i386[1] which I could reproduce multiple times in sid and in testing with the unmodified version of the package. [1]: salsa.debian.org/med-team/bedtools/-/jobs/4891166 The…

Required Qualifications: • A PhD degree in related field (Bioinformatics, Computer Science, Statistics, etc.) • Strong quantitative data analysis background (machine learning, biostatistics, etc.) and/or computational genomics/genetics experiences (spatial transcriptomics, single-cell sequencing, high-throughput omics sequencing data analysis, TWAS/GWAS, etc.) or other relevant areas. • Strong programming skills: (e.g., R, Python,…

One of my repositories that has seen good traction is the Google Cloud GenAI Application templates. These are a set of application templates that use Google Cloud services (Cloud Functions , Cloud Run) to interact with Google Cloud Vertex AI models like Text Bison, Chat Bison and more. There are…

The Singh Lab – Junior/Assistant/Associate/Full Specialist in Bioinformatics or Computational Biology SCHOOL OF MEDICINE – Department of Anatomy Description The lab of Dr. Param Singh at UCSF (www.singhlabucsf.org) is looking for a Junior/Assistant/Associate/Full Specialist with expertise in bioinformatics or computational biology to join our team and contribute to new and…

This is easy because MAFFT is installed via Conda, but you have not activated that Conda environment, thus it will not give you access to the program. If you type … conda activate labinf mafft This will now work. To activate this inside a shell script you simply include the…

Develop a TypeScript utility that checks OpenAPI spec files (yaml or json), and generates findings about how the spec is written, such as security schemas, complex models, usage of operationIds and tags, etc. Please take a good look at ChatGPT’s spec in [login to view URL] , and tell me…

In case you also want to implement that powerful logic into your already existing web application, then this bonus section might also be of interest to you. In our scenario, we’re building upon a sample web app provided by Google’s developer advocates. Feel free to adapt it to your own…

You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: y…@freebsd.org Log URL: pkg-status.freebsd.org/ampere3/data/140releng-armv7-default/08943441f26e/logs/py39-pytorch-2.0.1.log Build URL: pkg-status.freebsd.org/ampere3/build.html?mastername=140releng-armv7-default&build=08943441f26e Log: =>> Building misc/py-pytorch build started at Thu Nov 2…

RStudio Guide {:toc .toc-list-icons .hidden-md .hidden-lg} {::options parse_block_html=“true” /} What is R? Similar to Python, R is an open-source statistical software that is used to clean and analyze data. It is popular within the data science community and has many packages that make statistical modeling easier for statisticians and data…

Create Custom Multimodal AI Apps Easily Table of Contents: Introduction Building a Custom Multimodal AI Application using Google Cloud’s AI suite 2.1 Setting up the Environment 2.2 Crafting the Custom Web Application 2.3 Powering the System with Python Code 2.4 Utilizing the Flask Web Application Framework Incorporating the Multimodal Embeddings…

I have issues when running a wrapper of BWA mem with Snakemake. The error message “No module named ‘snakemake_wrapper_utils’” appear (see below). However, when checking if the package is installed in Python, I found the following: import snakemake_wrapper_utils print(snakemake_wrapper_utils.__version__) 0.1.0 Did anyone have this problem? Would you know why there…

If you are looking to improve your coding or development workflow you may be interested in a new artificial intelligent coding assistant created by Google. Duet AI is a chat interface that provides answers to cloud-related queries and offers guidance on best practices. It is specifically trained on Google Cloud…

Venture Global LNG Inc. has been granted authorization by the US Federal Energy Regulatory Commission (FERC) to place Blocks 7-9 of its 10-million tonne/year (tpy) Calcasieu Pass LNG plant in service, using a modified commissioning plan that will allow individual systems or equipment to be placed in service as ready (OGJ…

Field: Choose…EMDB IDTitleAuthorORCIDEM methodCurrent statusDeposition dateRelease dateDeposition siteLast processing siteFitted modelsRaw dataResolutionResolution methodSoftwareLigand nameComplex nameDomain nameDrug nameGO term nameInterPro term nameChEBI term nameExternal reference Publication titlePublication yearJournalPublication author Sample typeSample nameOrganismOrganism (NCBI code)StrainOrganTissueCellOrganelleCellular LocationE.C. numberMolecular Weight methodMolecular Weight (Da)Recombinant ExpressionRecombinant organismRecombinant organism (NCBI code)Recombinant strainRecombinant expression cellRecombinant expression plasmidDNA/RNA classificationDNA/RNA…