KEGG COMPOUND: C05924

KEGG COMPOUND: C05924     COMPOUND: C05924 Help Entry C05924                      Compound                                Name Molybdopterin;Pyranopterin;H2Dtpp-mP Formula C10H14N5O6PS2 Exact mass 395.0123 Mol weight 395.3518 Structure Mol fileKCF fileDB search Reaction Pathway Module M00880   Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor Enzyme Other DBs KCF data Show ATOM        24            1   S1a S    22.7500  -13.4003            2   S1a S    25.1308  -14.8087            3   C2y C    22.7383  -14.7666            4   C2y C    23.9353  -15.4866            5   C1y C    21.5555  -15.4809            6   C1y C    23.9236  -16.8776            7   C1y C    21.5496  -16.8718            8   N1x N    20.3269  -14.7608            9   C1b…

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Integration of Liquid Biopsies in Clinical Management of Metastatic Prostate Cancer

This article was originally published here Curr Oncol Rep. 2022 May 16. doi: 10.1007/s11912-022-01278-0. Online ahead of print. ABSTRACT PURPOSE OF REVIEW: The field of liquid biopsies is constantly evolving through novel technologies. This review outlines current data on liquid biopsies and application to clinical management of metastatic prostate cancer….

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An introduction to EMBL-EBI resources

The EMBL-EBI is the home of the world’s most comprehensive range of freely available molecular databases and resources. Our resources help researchers share and analyse data and perform complex queries in many different ways. Join us for a tour of the core data resources at EMBL-EBI. Who is this…

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Pose Residual Network Pytorch – Python Repo

This repository contains a PyTorch implementation of the Pose Residual Network (PRN) presented in our ECCV 2018 paper: Muhammed Kocabas, Salih Karagoz, Emre Akbas. MultiPoseNet: Fast Multi-Person Pose Estimation using Pose Residual Network. In ECCV, 2018. arxiv PRN is described in Section 3.2 of the paper. Results on COCO val2017…

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Is MTHFD1 polymorphism rs 2236225 (c.1958G>A) associated with the susceptibility of NSCL/P? A systematic review and meta-analysis – Huaxiang Zhao, Jieni Zhang, Mengqi Zhang, Feng Deng, Leilei Zheng, Hui Zheng, Feng Chen, Jiuxiang Lin

@article{Zhao2015, author = {Zhao, Huaxiang and Zhang, Jieni and Zhang, Mengqi and Deng, Feng and Zheng, Leilei and Zheng, Hui and Chen, Feng and Lin, Jiuxiang}, doi = {10.12688/f1000research.6425.2}, journal = {F1000Research}, month = {jun}, title = {Is MTHFD1 polymorphism rs 2236225 (c.1958G>A) associated with the susceptibility of NSCL/P? A…

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Accepted r-bioc-rgsepd 1.28.0-1 (source) into unstable

—–BEGIN PGP SIGNED MESSAGE—– Hash: SHA512 Format: 1.8 Date: Tue, 17 May 2022 08:43:38 +0200 Source: r-bioc-rgsepd Architecture: source Version: 1.28.0-1 Distribution: unstable Urgency: medium Maintainer: Debian R Packages Maintainers <r-pkg-t…@alioth-lists.debian.net> Changed-By: Andreas Tille <ti…@debian.org> Changes: r-bioc-rgsepd (1.28.0-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.1 (routine-update) Checksums-Sha1:…

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Escherichia coli K-12 substr. MG1655 GO:0033468

Escherichia coli K-12 substr. MG1655 Gene-Ontology-Terms Class: GO:0033468 – CMP-keto-3-deoxy-D-manno-octulosonic acid biosynthetic process Synonyms: CMP-KDO biosynthesis, CMP-KDO biosynthetic process, CMP-keto-3-deoxy-D-manno-octulosonic acid anabolism, CMP-keto-3-deoxy-D-manno-octulosonic acid biosynthesis, CMP-keto-3-deoxy-D-manno-octulosonic acid formation, CMP-keto-3-deoxy-D-manno-octulosonic acid synthesis Definition: The chemical reactions and pathways resulting in the formation of CMP-keto-3-deoxy-D-manno-octulosonic acid, a substance composed of the acidic…

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il15 related Antibodies, Proteins, cDNA and ELISA Kits- Cusabio

Interleukin-15 is a protein in humans that is encoded by IL15 gene. Cytokine that stimulates the proliferation of T-lymphocytes. Stimulation by IL-15 requires interaction of IL-15 with components of IL-2R, including IL-2R beta and probably IL-2R gamma but not IL-2R alpha. il15 Proteins il15 Proteins for Mus musculus (Mouse) il15…

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RNAseq analysis of treatment-dependent signaling changes during inflammation in a mouse cutaneous wound healing model | Ian Toma

RNAseq analysis of treatment-dependent signaling changes during inflammation in a mouse cutaneous wound healing model | Ian Toma – Academia.edu Academia.edu uses cookies to personalize content, tailor ads and improve the user experience. By using our site, you agree to our collection of information through the use of cookies. To…

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Accepted r-bioc-scrnaseq 2.10.0+ds-1 (source) into unstable

—–BEGIN PGP SIGNED MESSAGE—– Hash: SHA512 Format: 1.8 Date: Tue, 17 May 2022 07:49:00 +0200 Source: r-bioc-scrnaseq Architecture: source Version: 2.10.0+ds-1 Distribution: unstable Urgency: medium Maintainer: Debian R Packages Maintainers <r-pkg-t…@alioth-lists.debian.net> Changed-By: Andreas Tille <ti…@debian.org> Changes: r-bioc-scrnaseq (2.10.0+ds-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version:…

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downloading human rRNA.fasta

downloading human rRNA.fasta 1 I am trying to download human rRNA.fasta file. do you know where I can find this file? in one of the older post in this forum, someone said this file can be found on the UCSC but I did not manage. rRNA • 154 views •…

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TMEM151A Variants Cause Paroxysmal Kinesigenic Dyskinesia (PKD)

Paroxysmal dyskinesia is the most prevalent kind of paroxysmal kinesigenic dyskinesia (PKD). Proline-rich transmembrane protein 2 (PRRT2) mutations are responsible for just one-third of PKD patients. For a study, researchers sought to look for a possible PKD causal gene. A total of 196 PRRT2-negative PKD patients were included in the…

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Classification using Evaluate Prequential in Scikit-multiflow

I’m new in this community and I want to apologize in advance for any errors I might make in asking the following question. So, I have to implement a classification task using scikit-multiflow for a big dataset (84 feature x 2,5 millions of examples), processed like a stream. After many…

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Obtain equivalent variant ids (chr-pos-ref-alt) for GRCh37 and GRCh38

Obtain equivalent variant ids (chr-pos-ref-alt) for GRCh37 and GRCh38 0 Hi all, I want to obtain the equivalent variant id (chr-pos-ref-alt) from GRCh38 in GRCh37. This is to deal with some variants poorly lifted over. To exemplify, see the variant gnomad.broadinstitute.org/variant/10-17838942-A-G?dataset=gnomad_r3 It has two equivalents in GRCh37. I want to…

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Index of /~ckern/FAANG_Project/Pig/DeepTools

Name Last modified Size Description Parent Directory   –   H3K4me3_Liver_P348.bw 2016-06-24 10:33 60M   H3K4me3_Liver_P348_vs_Input.bw 2016-06-24 20:31 120M   H3K4me3_Liver_P350.bw 2016-06-24 10:37 78M   H3K4me3_Liver_P350_vs_Input.bw 2016-06-24 21:09 128M   H3K4me3_MultiBigwigSummary.npz 2016-06-24 13:44 17M   H3K4me3_Spleen_P348.bw 2016-06-24 10:40 67M   H3K4me3_Spleen_P348_vs_Input.bw 2016-06-24 21:50 128M   H3K4me3_Spleen_P350.bw 2016-06-24 10:43 66M  …

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CENTURY THERAPEUTICS, INC. Management’s discussion and analysis of financial condition and results of operations (form 10-Q)

The following discussion and analysis should be read in conjunction with our financial statements and accompanying notes included in this Quarterly Report on Form 10-Q and the financial statements and accompanying notes thereto for the fiscal year ended December 31, 2021 and the related Management’s Discussion and Analysis of Financial…

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Variant #0000255165 (NC_000010.10:g.123278248A>G, FGFR2(NM_000141.4):c.939+1245T>C) – Global Variome shared LOVD

Variant #0000255165 (NC_000010.10:g.123278248A>G, FGFR2(NM_000141.4):c.939+1245T>C) Chromosome 10 Allele Unknown Affects function (as reported) Probably does not affect function Affects function (by curator) Not classified Classification method – Clinical classification likely benign DNA change (genomic) (Relative to hg19 / GRCh37) g.123278248A>G DNA change (hg38) g.121518734A>G Published as FGFR2(NM_022970.3):c.1035T>C (p.Y345=) ISCN – DB-ID FGFR2_000119 Variant remarks VKGL data sharing initiative Nederland Reference – ClinVar ID – dbSNP ID – Origin CLASSIFICATION record Segregation –…

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Restriction Endonucleases Products (REP) Market: Overview, Major Trends & Regional Assessment

Global Restriction Endonucleases Products (REP) Market: Overview Albany NY, United States: The leading applications for the products and solutions offered by the manufacturers and players functional in the landscape of the global restriction endonucleases products market include epigenetics, fragment length polymorphism or RFLP, cloning, sequencing, polymerase chain reaction, and restriction…

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By keeping the Immune System in good condition, Gut Microbiome protects us from viral infections

The gut microbiota is crucial for health. However, how these non-invasive microbes communicate with the rest of the body to improve host physiology is not fully understood. Researchers from Stockholm, Umea, and Gothenburg Universities, Sweden, claim that the gut microbiota is essential for natural resistance to viral infections. This evidence…

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Parse a file of strings in python separated by newline into a json array

I don’t see where you’re actually reading from the file in the first place. You have to actually read your path_text.txt before you can format it correctly right? with open(‘path_text.txt’,’r’,encoding=’utf-8′) as myfile: content = myfiel.read().splitlines() Which will give you [‘/gp/oi/eu/gatk/inputs/NA12878_24RG_med.hg38.bam’, ‘/gp/oi/eu/gatk/inputs/NA12878_24RG_small.hg38.bam’] in content. Now if you want to write this…

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Sweeps while using MPI and SLURM – W&B Support

Hello! I am attempting to perform a hyperparameter search on my project, which uses MPI under the hood to aggregate the results of multiple agents. I have 63 agents that run an episode, returning a total reward at the end. At the end, each worker node sends their results to…

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Single-cell eQTL models reveal dynamic T cell state dependence of disease loci – Nature – Alert Breaking News

Wei, K. et al. Notch signalling drives synovial fibroblast identity and arthritis pathology. Nature 582, 259–264 (2020). ADS CAS PubMed PubMed Central Article Google Scholar  Cembrowski, M. S. & Menon, V. Continuous variation within cell types of the nervous system. Trends Neurosci. 41, 337–348 (2018). CAS PubMed Article Google Scholar  Maurano, M. T. et al. Systematic localization of…

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Splitting a GenBank file into smaller files

19  Upvotes · 1 Comments 18  Upvotes · 1 Comments 20  Upvotes · 1 Comments 24  Upvotes · 1 Comments 19  Upvotes · 1 Comments 24  Upvotes · 1 Comments 24  Upvotes · 1 Comments Read more here: Source link

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Dissertations.se: HETEROPLASMY

Showing result 1 – 5 of 7 swedish dissertations containing the word Heteroplasmy. Author : Guilherme Costa Baião; Lisa Klasson; Alistair Darby; Uppsala universitet; []Keywords : NATURAL SCIENCES; NATURVETENSKAP; NATURVETENSKAP; NATURAL SCIENCES; Wolbachia; Drosophila; Drosophila paulistorum; Differential Gene Expression; Reproductive Incompatibility; Reproductive Isolation; Comparative Genomics; Transcriptomics; RNA-Seq; Heteroplasmy; Mitochondria; Genomic…

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Global Nucleic Acid Labeling Market 2022 to 2028 Latest Innovations and Major Players are Merck & Co., Inc., PerkinElmer, Inc.

The global markets are being disrupted by the arrival of industry 4.0, which is accompanied by digitalization, automation, and artificial intelligence. Fundamental geopolitical shifts are changing global economic power centers. As a result, The Brainy Insights has launched a research study on the future of the global Nucleic Acid Labeling…

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Incorrect results due to gaps at z axis – LAMMPS Beginners

Dear all, I have a simple water box and used spc/e model to compute the viscosity based on Lammps documents (Green-Kubo model). So, I got nice results and compatible to others.However, there is a discrepancy for the output result when I create 2 Angstrom gaps at z=0 and z=60 Angestrom….

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Regarding the use of -table and -tablep – User discussions

GROMACS version: 2018.3GROMACS modification: No Hi, I am trying to simulate a polymer-water system where the polymer beads interact by Weeks-Chandler-Andersen potential and all the other non-bonded interactions are LJ type. I have two tabulated potential files: (i) table.xvg (for LJ) and (ii) table_P_P.xvg (for WCA). In the .mdp file…

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Page Not Found : 404

Select city Sign in × Select Your City We have got 40,000 cities covered worldwide Discover Events from nearby cities Discover Online Events – Attend from anywhere → No result found! Try with different keywords! The page you’re looking for can’t be found. The URL may be misspelled or the…

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How do I install biopython in anaconda?

Package maintainers recommend using (in the terminal): conda install -c conda-forge biopython We deliberately recommend using Biopython from the conda-forge channel, as this is usually up to date and covers Windows, Mac OS X and Linux. The default Conda channel does have Biopython, but is often out of date. biopython.org/wiki/Packages…

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Data Analysis and Machine Learning for Competitive Data Science PDF

eBook Name: The Kaggle Book: Data analysis and machine learning for competitive data science by Konrad Banachewicz, Luca Massaron and Anthony Goldbloom. Summary Of This eBook: Get a step ahead of your competitors with insights from over 30 Kaggle Masters and Grandmasters. Discover tips, tricks, and best practices for competing effectively…

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InteractiveComplexHeatmap on DESeq2 object with more than 2 groups

InteractiveComplexHeatmap on DESeq2 object with more than 2 groups 1 Hello all, I’m writing with the hope someone can clarify a doubt I have about the differential heatmap generated by the package InteractiveComplexHeatmap via the simple command interactivate(dds). I read the package documentation at bioconductor.org/packages/release/bioc/html/InteractiveComplexHeatmap.html, but I couldn’t find the…

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Is it correct to use Tophat2 directly followed by Cuffquant to only align to the reference transcriptomes without wishing to assemble new transcripts?

Is it correct to use Tophat2 directly followed by Cuffquant to only align to the reference transcriptomes without wishing to assemble new transcripts? 1 Hi, friends. I only want to perform differential expression analysis on the annotated transcripts of my existing reference genome. I use tophat2 for alignment with –no-novel-juncs…

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How can you put a bash array into a wdl variable?

Given two separate wdl arrays, my command section will do some modifications to each array and place the output into two separate bash arrays. Finally, I want to output the two separate bash arrays in the output section of the wdl task to be used in other tasks within the…

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genetic epidemiology postdoc

Qualification Details. Objective/methods: This report investigates by histology, immunohistochemistry and in situ hybridization the histological and . Philip Lupo, Ph.D. Dr. Lupo is a co-principal investigator in the Systems Epidemiology of Cancer Training Program and an associate professor in the Section of Hematology-Oncology in the Department of Pediatrics. . «Genetic…

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Assistant Project Scientist, Bioinformatics in Los Angeles, CA for University of California Los Angeles

Details Posted: 15-May-22 Location: Los Angeles, California Type: Full-time Salary: Open Categories: Academic/Faculty Physical Sciences Assistant Project Scientist, BioinformaticsUniversity of California Los Angeles Requisition Number: JPF07378 The Department of Molecular and Medical Pharmacology is recruiting for a bioinformatics Project Scientist at the Assistant level. The candidate will investigate the human…

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Academic Jobs in Europe – Apply Online at jobs.ac.uk

PhD Alert Created Job Alert Created Your PhD alert has been successfully created for this search. Your job alert has been successfully created for this search. Ok Ok jobs.ac.uk Account Required In order to create multiple alerts, you must create a jobs.ac.uk jobseeker account Create Account Create Account Alert Creation…

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minimum number of protein sequences for a sequence logo

minimum number of protein sequences for a sequence logo 1 Hi, I’m interested in generating sequence logo of a series of defensin related proteins I’ve clustered using CD-Hit. There are aproximately 7600 sequences with about 2500 clusters, but many of them have few sequences per cluster. Which is the minimum…

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MND1 Expression as a Predictor of Breast Cancer Survival

Introduction Breast cancer (BC) is the most commonly diagnosed cancer in women, and it is the main cause of cancer mortality in women around the world.1 Although standard treatments for breast cancer, including surgery, radiotherapy, chemotherapy, endocrine therapy, targeted therapy, and immunotherapy, have greatly improved during the last few decades.2,3…

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Unicode Characters in ggplot2 PDF Output

As Ben suggested, cairo_pdf() is your friend. It also allows you to embed non-postscript fonts (i.e. TTF/OTF) in the PDF via the family argument (crucial if you don’t happen to have any postscript fonts that contain the glyphs you want to use). For example: library(ggplot2) cairo_pdf(“example.pdf”, family=”DejaVu Sans”) qplot(Sepal.Length, Petal.Length,…

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Reordering boxplot (ggplot) with scale_x_discrete(limits=(…) results in Warning message: Removed 103 rows containing missing values (stat_boxplot)

Probably a user error but I can’t find it for the life of me. Trying to rearrange the order of factors in a boxplot I am making using ggplot using the, “scale_x_discrete(limits=(…)” function. Doing so results in the following warning message “Warning message: Removed 103 rows containing missing values (stat_boxplot”….

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How to set NotebookApp.iopub_data_rate_limit and others NotebookApp settings in JupyterHub?

Open the command line and enter jupyter notebook –NotebookApp.iopub_data_rate_limit=1e10 This should start jupyter with the increased data rate. You have to create config file using this command $ jupyter notebook –generate-config, The answer in this link 04: “IOPUB data rate exceeded” problem of “jupyter low memory..” in windows: open cmd:…

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Open API Market Size, Trends and Forecast to 2029

New Jersey, United States – The Open API Market report includes the upcoming challenges and opportunities in the market. It ensures a strengthened position in the market and a growing product portfolio by providing all the important details related to the market growth. It reveals some of the key insights and focuses…

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Accelerating minimap2 for long-read sequencing applications on modern CPUs ePrints@IISc

Kalikar, S and Jain, C and Vasimuddin, M and Misra, S (2022) Accelerating minimap2 for long-read sequencing applications on modern CPUs. In: Nature Computational Science, 2 (2). pp. 78-83. Full text not available from this repository. Abstract Long-read sequencing is now routinely used at scale for genomics and transcriptomics applications….

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Montealto: Libreng Sakay may extend to July 10

A bus waits for passengers who would like to avail of the government’s Libreng Sakay program. | File photo CEBU CITY, Philippines – Some of the vehicles that were commissioned for the government’s Libreng Sakay program may continue to ply some Central Visayas roads after the program would have commenced…

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DataSheet1_Enhancing Long-Read-Based Strain-Aware Metagenome Assembly.PDF

Microbial communities are usually highly diverse and often involve multiple strains from the participating species due to the rapid evolution of microorganisms. In such a complex microecosystem, different strains may show different biological functions. While reconstruction of individual genomes at the strain level is vital for accurately deciphering the composition…

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The Innovation Arena: A Method for Comparing Innovative Problem-Solving Across Groups

The Innovation Arena is a novel comparative method for studying technical innovation rate per time unit in animals. It is composed of 20 different problem-solving tasks, which are presented simultaneously. Innovations can be carried out freely and the setup is robust with regard to predispositions on an individual, population or…

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Molecular mechanism of ZDHHC18-mediated palmitoylation of cGAS in innate immunity inhibition

Detection of double-stranded DNA by cGAS triggers innate immune responses. ZDHHC18-mediated palmitoylation of cGAS sheds light on a novel posttranslational modification that leads to the fine-tuning of cGAS-mediated innate immune responses. Credit: The EMBO Journal (2022). DOI: 10.15252/embj.2021109272 Cyclic GMP-AMP synthase (cGAS), a double-stranded DNA (dsDNA) sensing protein, plays an…

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A Highly Sensitive and Specific Detection Method for Mycobacterium tuberculosis Fluoroquinolone Resistance Mutations Utilizing the CRISPR-Cas13a System

Objectives CRISPR-Cas13a system-based nucleic acid detection methods are reported to have rapid and sensitive DNA detection. However, the screening strategy for crRNAs that enables CRISPR-Cas13a single-base resolution DNA detection of human pathogens remains unclear. Methods A combined rational design and target mutation-anchoring CRISPR RNA (crRNA) screening strategy was proposed. Results…

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Researchers identify cellular serpins as host factors that restrict SARS-CoV-2 infection

The mass vaccination programs against coronavirus disease 2019 (COVID-19) received massive media attention and were widely credited for reducing the threat of the disease. However, many countries struggle to obtain enough doses to immunize their population, and some immunocompromised individuals are less protected by the vaccines. There is still a…

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WGS Facilitates Gene Editing System Upgrade

Researchers at the Korean Institute of Life Sciences and Technology engineered an efficient, miniaturized CRISPR-Cas gene-editing system that may be more easily packed into vectors for clinical applications. Their system employs the Cas variant Cas12f1 with a guide RNA (gRNA) remodeled to mitigate off-target effects, a design that could potentially…

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Nature Papers on Flying Spider-Monkey Tree Fern Genome, Single-Nucleus Sequencing of Purkinje Cells

The genome of the flying spider-monkey tree fern, Alsophila spinulosa, is reported in Nature Plants this week, providing new insights into tree fern biology. Despite ferns’ high ornamental value and potential as a source of natural products with pharmaceutical applications, little is known about their evolution, with only two small…

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Oncolytic Adenovirus with SPAG9 shRNA Driven by DD3 Promoter Improved the Efficacy of Docetaxil for Prostate Cancer

. 2022 Apr 30;2022:7918067. doi: 10.1155/2022/7918067. eCollection 2022. Affiliations Expand Affiliations 1 Department of Urology, The Second Affiliated Hospital of Soochow University, Suzhou 215004, Jiangsu Province, China. 2 Department of Urology, The Affiliated Hospital of Xuzhou Medical University, Xuzhou 221002, Jiangsu Province, China. Free PMC article Item in Clipboard Meng…

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Help Implementing ECDSA using PSA crypto API of mbedTLS – Nordic Q&A – Nordic DevZone

I have implemented as this. Looks good ? //Verify The Digital Signature received from GATT Client (Mobile) //ECC curve used NIST (P-256 R1), HASH Algorithm used : SHA256 static psa_status_t CRYPTO_VerifyMessage(const uint8_t * input, size_t input_length,                            …

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Accepted r-bioc-rsubread 2.10.0-1 (source) into unstable

—–BEGIN PGP SIGNED MESSAGE—– Hash: SHA512 Format: 1.8 Date: Thu, 12 May 2022 14:00:29 +0200 Source: r-bioc-rsubread Architecture: source Version: 2.10.0-1 Distribution: unstable Urgency: medium Maintainer: Debian R Packages Maintainers <r-pkg-t…@alioth-lists.debian.net> Changed-By: Andreas Tille <ti…@debian.org> Changes: r-bioc-rsubread (2.10.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version:…

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Single-Cell Transcriptome Resource From Human Cell Atlas Team Yields Immune, Disease Insights

NEW YORK – A large international team came up with single-cell and single-nucleus transcriptomic resources to characterize the diverse cell types found in the human body, along with related gene expression and splicing features that offer clues to processes at play within and across tissues and organs. In a series…

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losing large amount of reads when using Qiime2 vsearch joinpairs command

losing large amount of reads when using Qiime2 vsearch joinpairs command 0 Hi there! I am running various sediment samples (Illumina for amplicon 16S – V4V5 sequencing) through the Qiime2 pipeline, however when I use vsearch joinpairs to join my paired end reads I lose a bunch of reads. For…

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Novel supramolecular CRISPR-Cas9 carrier enables more efficient genome editing — ScienceDaily

Clustered regularly interspaced short palindromic repeats (CRISPR) and their accompanying protein, CRISPR-associated protein 9 (Cas9), made international headlines a few years ago as a game-changing genome editing system. Consisting of Cas9 and strand of genetic material known as a single-guide RNA (sgRNA), the system can target specific regions of DNA…

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Genetic and chemotherapeutic influences on germline hypermutation

DNM filtering in 100,000 Genomes Project We analysed DNMs called in 13,949 parent–offspring trios from 12,609 families from the rare disease programme of the 100,000 Genomes Project. The rare disease cohort includes individuals with a wide array of diseases, including neurodevelopmental disorders, cardiovascular disorders, renal and urinary tract disorders, ophthalmological…

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RPostgreSQL connections are expired as soon as they are initiated with doParallel clusterEvalQ

I was able to reproduce your problem locally. I am not entirely sure but I think the problem is related to the way clusterEvalQ works internally. For example, you say that dbGetQuery(con, “select inet_client_port()) gave you the client port output. If the query was actually evaluated/executed on the cluster nodes…

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Role of CD68 in tumor immunity and prognosis prediction in pan-cancer

Expression of CD68 in pan-cancer First, to fully clarify the expression of CD68 in pan-cancer, we matched the GTEx normal samples with TCGA tumor samples (Fig. 1A). We found that the levels of CD68 were significantly elevated (P < 0.01) in colon adenocarcinoma (COAD), glioblastoma multiforme (GBM), kidney renal clear cell carcinoma (KIRC),…

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Mulugeta Metaferia – Academia.edu

Mulugeta Metaferia – Academia.edu Academia.edu no longer supports Internet Explorer. To browse Academia.edu and the wider internet faster and more securely, please take a few seconds to upgrade your browser. Academia.edu uses cookies to personalize content, tailor ads and improve the user experience. By using our site, you agree to our…

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Database Administrator at European Molecular Biology Laboratory (EMBL)

About the team/job In this role you will join an established Database team of database administrators in order to support the ongoing database operations. The main duties for this post are: DBA of MySQL and MongoDB.The Database Team provides day-to-day Database Administration support , database performance tuning and query optimization…

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Unsuccessful DE analysis using limma

This might be a bit long, please bare with me. I’m conducting a differential expression analysis using limma – voom. My comparison is regarding response vs non-response to a cancer drug. However, I’m not getting any DE genes, absolute zeros. Someone here once recommended not to use contrast matrix for…

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COVID-19 vaccines in liver transplant recipients

Introduction Three waves of world wild emerging severe infectious disease pandemics have been presented during this century because of the coronavirus. The severe acute respiratory syndrome (SARS) outbreak in southern China since 2002 has spread to 8096 cases from 29 countries, with a mortality of 9.6%.1 Middle East respiratory syndrome…

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GitHub – akonecny/Bulk-RNAseq-Tumor_vs_Inflamed: TBD

GitHub – akonecny/Bulk-RNAseq-Tumor_vs_Inflamed: TBD This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository. You can’t perform that action at this time. You signed in with another tab or window. Reload to refresh your session. You signed out in…

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Special Issue : Methods and Tools in RNA Biology

A special issue of Non-Coding RNA (ISSN 2311-553X). Deadline for manuscript submissions: 30 November 2022 | Viewed by 9 Special Issue Editors Dr. Mirolyuba Ilieva E-Mail Website Guest Editor Center for RNA Medicine, Department of Clinical Medicine, Aalborg University, DK-2450 Copenhagen SV, DenmarkInterests: non-coding RNAs; stem cell biology; neuroscience Special…

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Norgen 16S rRNA and ITS Library Preparation Kits

Analyze Bacterial and Fungal Microbiomes 16S rRNA Library Preparation Kits Simple and quick workflow. Library could be prepared in less than 4 hours Part of Norgen’s metagenomics workflow: collection, preservation, DNA isolation, sequencing, and analysis. Protocol optimized for DNA isolated from a large range of sample types Up to 384…

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A novel circRNA, circRACGAP1, hampers the progression of systemic lupus erythematosus via miR-22-3p-mediated AKT signalling

This article was originally published here Autoimmunity. 2022 May 11:1-11. doi: 10.1080/08916934.2022.2073590. Online ahead of print. ABSTRACT BACKGROUND: Systemic lupus erythematosus (SLE) is defined as a multisystem autoimmune disease involving various organs, of which exact molecular mechanisms remain elusive. Here, we aimed to investigate a novel circular RNA (circRNA), circRACGAP1,…

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Description, Programming Languages, Similar Projects of Python-for-Text-Classification

Python for Text Classification with Machine Learning in Python 3.6. Installation Guide Start your environment by picking either pipenv (recommended) or virtualenv. Simple guides are below. Using pipenv Initialize pipenv (setup guide): cd path/to/your/dev/folder mkdir text-classify cd text-classify pipenv install –three After installation of pipenv works, just activate it (same…

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ACADVL – PrimePCR Assay and Template | Life Science

Control assays and synthetic DNA templates were designed to facilitate the assessment of the key experimental factors impacting your real-time PCR results. DNA Contamination Control AssayUse the PrimePCR DNA contamination control assay to determine if genomic DNA (gDNA) is present in a sample at a level that may affect PCR…

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Editas Medicine (EDIT) Falls 4.05% on May 10

Last Price $ Last Trade Change $ Change Percent % Open $ Prev Close $ High $ low $ 52 Week High $ 52 Week Low $ Market Cap PE Ratio Volume Exchange EDIT – Market Data & News Trade Editas Medicine Inc (NASDAQ: EDIT) has fallen $0.45 (4.05%) and …

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clara-parabricks/NVIDIA-Clara-Parabricks-Somatic-Variant-Calling-AWS-Blog: AWS Blog (Somatic Variant Calling )

GitHub – clara-parabricks/NVIDIA-Clara-Parabricks-Somatic-Variant-Calling-AWS-Blog: AWS Blog (Somatic Variant Calling ) This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository. You can’t perform that action at this time. You signed in with another tab or window. Reload to refresh your…

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Cogent Biosciences Reports Recent Business Highlights and First Quarter 2022 Financial Results

Cogent Biosciences, Inc. Initial bezuclastinib APEX data to be presented at the European Hematology Association (EHA) 2022 Annual Congress Building a portfolio of discovery stage programs, creating potential best-in-class small molecule kinase inhibitors for genetically defined oncology indications and rare diseases Ended 1Q 2022 with $191.0 million in cash, sufficient…

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CALITHERA BIOSCIENCES, INC. MANAGEMENT’S DISCUSSION AND ANALYSIS OF FINANCIAL CONDITION AND RESULTS OF OPERATIONS (form 10-Q)

You should read the following discussion and analysis of our financial condition and results of operations in conjunction with our unaudited condensed consolidated financial statements and related notes included in Part I, Item 1 of this report. This Quarterly Report on Form 10-Q contains forward-looking statements within the meaning of…

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Researchers Probe Genetics Behind a Lizard’s Odd Immune System

Tiliqua rugosa—also known as the sleepy lizard—is a gorgeously chunky species, part lizard and part pinecone in appearance, which is found across the southern half of Australia. But it’s what’s on the inside that has captured the attention of researchers. Reptiles in general have immune systems that are unusual from…

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Error while installing “object I is not exported by namespace:S4Vectors

met a problem while installing the LTLA/SingleR 1.5.3, urgent, thank you very much for help installing to /home/binf0xx/R/x86_64-pc-linux-gnu-library/4.0/00LOCK-SingleR/00new/SingleR/libs ** R ** inst ** byte-compile and prepare package for lazy loading Error: object ‘I’ is not exported by ‘namespace:S4Vectors’ Execution halted ERROR: lazy loading failed for package ‘SingleR’ removing ‘/home/binf0xx/R/x86_64-pc-linux-gnu-library/4.0/SingleR’ Read…

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Search more than 200 leading titles in the biological, ecological, and environmental sciences.

Announcing the 2022 BioOne Ambassador Award Winners BioOne is pleased to announce the winners of the 2022 BioOne Ambassador Award. This prestigious award recognizes early-career authors who excel in the communication of their research to the general public. We invite you to read the 2022 BioOne Ambassador Award winners’…

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Index of /~psgendb/doc/pkg/cd-hit-v4.8.1-2019-0228/doc

Name Last modified Size Description Parent Directory   –   Figure1.png 2015-05-05 00:44 43K   Figure2.png 2015-05-05 00:44 42K   Figure3.png 2015-05-05 00:44 129K   Figure4.png 2015-05-05 00:44 30K   cd-hit-est.man 2020-06-16 12:13 5.6K   cd-hit-otu-miseq-Fig..> 2017-03-25 12:00 117K   cd-hit.man 2020-06-16 12:12 4.4K   cdhit-user-guide.pdf 2017-05-01 11:52 412K  …

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Z697 – YFull YTree Info

R-Z697 – YFull YTree Info SNPs currently defining R-Z697 Z697     Sample ID Country / Language Info Ref File Testing company Statistics Status YF009397 Sweden (Västra Götalands län) R-Z697* —— Hg19 .BAM FTDNA (Y500) 81X, 14.4 Mbp, 165 bp YF084333 Italy (Chieti) R-FT285492 —— Hg38 .BAM Dante Labs 14X, 23.4…

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SchedMD Slurm privilege escalation | CVE-2022-29501

NAME SchedMD Slurm privilege escalation Platforms Affected:SchedMD Slurm 20.11.6SchedMD Slurm 20.02.6 Risk Level:9.8 Exploitability:Unproven Consequences:Gain Privileges DESCRIPTION SchedMD Slurm could allow a remote attacker to gain elevated privileges on the system, caused by improper access control in a network RPC handler in the slurmd daemon used for PMI2 and PMIx…

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Mediation analysis of local chromatin state and gene expression data in human cell lines.

SNP associations with (a) SLFN5 and (b) GPR63 expression (top) and nearby chromatin accessibility (bottom) for variants on the genes’ chromosome. Peak SNPs are labeled. Mediation results for the (c) SLFN5 eQTL and (d) GPR63 eQTL. Log posterior odds from Bayesian model selection (top), -log10 p-values from Sobel test (middle),…

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RefSeq Release 212 is available!

RefSeq Release 212 is now available online, from the FTP site and through NCBI’s Entrezprogramming utilities, E-utilities. This full release incorporates genomic, transcript, and protein data available as of May 2, 2022, and contains 314,915,153 records, including 229,417,182 proteins, 44,805,833 RNAs, and sequences from 119,373 organisms. The release is provided in several directories…

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Frontiers | Divergence With Gene Flow and Contrasting Population Size Blur the Species Boundary in Cycas Sect. Asiorientales, as Inferred From Morphology and RAD-Seq Data

Introduction Incipient species are critical for evolutionary biologists to study speciation, but they also challenge taxonomy due to gene flow or ancestral polymorphism. The former and contrasting population size lead to larger intraspecific than interspecific variations, a phenomenon called the species-definition anomaly zone (Jiao and Yang, 2021). The latter results…

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is_real vs. in RR for variables

OK, this explanation seems to be reasonable. But maybe the site doc.sagemath.org/html/en/tutorial/tour_rings.html should be edited (adding “An approximation to the field of real numbers using floating point numbers with any specified precision”). Currently there is: “the real numbers, called RR in Sage”. Ok, x is not a number but a…

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NCBI C++ ToolKit: src/objtools/data_loaders/genbank/incr_time.cpp Source File

Go to the documentation of this file. Go to the SVN repository for this file. 44  const string& driver_name, 47  m_InitTime = x_GetDoubleParam(conf, driver_name, params.m_Initial); 48  m_MaxTime = x_GetDoubleParam(conf, driver_name, params.m_Maximal); 49  m_Multiplier = x_GetDoubleParam(conf, driver_name, params.m_Multiplier); 50  m_Increment = x_GetDoubleParam(conf, driver_name, params.m_Increment); 55  const string& driver_name, 68  if (…

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(PDF) Intraspecific variability (rDNA ITS and mtDNA Cyt b) of Phlebotomus sergenti in Spain and Morocco | Montserrat Gallego

(PDF) Intraspecific variability (rDNA ITS and mtDNA Cyt b) of Phlebotomus sergenti in Spain and Morocco | Montserrat Gallego – Academia.edu Academia.edu uses cookies to personalize content, tailor ads and improve the user experience. By using our site, you agree to our collection of information through the use of cookies….

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Curtis Rogers on DNA detection: ‘Do I want to solve murders?’

One evening in April 2018, Curtis Rogers sits in front of the TV in Delray Beach, Florida with his wife. An American newscaster reports breaking news† A serial killer – the ‘Golden State Killer’ – has been arrested. That was possible thanks to “the most innovative DNA technology that exists…

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Our genetic strength in numbers

Although it’s 20 years since the first human genome was sequenced – that is, the entire collection of our DNA – our ability to ‘read’ our own instruction manual is no less astounding. We now know we have around three billion chemical base pairs that provide the code for approximately…

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Debian — Details of package staden-io-lib-examples in bullseye

programs for manipulating DNA sequencing files (usage examples) The io_lib from the Staden package is a library of file reading and writing code to provide a general purpose trace file (and Experiment File) reading interface. It has been compiled and tested on a variety of unix systems, MacOS X and MS…

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[lammps-users] Fix Twist? – LAMMPS Mailing List Mirror

Hi, I can see that there are several options in lammps to do twisting of the particles. Is anyone aware whether the following proposed fix (fix twist) in the links below is available in the latest version of lammps? Can “fix twist” be replaced with another name? www.youtube.com/watch?v=tnhUKxsAaqw orwww.youtube.com/watch?v=TzCJ4BTUQ20 Thanks,Hadi…

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How to calculate total interaction energy between protein and polyethylene surface – User discussions

Teabo May 9, 2022, 4:03am #1 GROMACS version: Gromacs 2018GROMACS modification: NoHere post your questionDear all,I have a system including one protein and one polyethylene layer. I wonder how to calculate the interaction energy between the protein and the polyethylene layer, should I use gmx enemat? Or could anyone suggest…

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BlastX through Biopython

BlastX through Biopython 0 I have an unknown gene segment in the Human_gene.txt file and I want to run blastx (translated nucleotide) using the blast module of Biopython by making the E-value threshold 0.0001 and displaying the match result of 50 residues of query and subject. I am trying this…

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java – Calculating physico-chemical properties of amino acids in Biojava

I need to calculate the number and percentages of polar/non-polar, aliphatic/aromatic/heterocyclic amino acids in this protein sequence that I got from UNIPROT, using BioJava. I have found in the BioJava tutorial how to read the Fasta files and implemented this code. But I have no ideas how to solve this…

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Bioconductor – htrat230pmprobe

DOI: 10.18129/B9.bioc.htrat230pmprobe     This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, see htrat230pmprobe. Probe sequence data for microarrays of type htrat230pm Bioconductor version: 3.14 This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from www.affymetrix.com. The…

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First notebook – looking for advice : kaggle

Hello r/kaggle This is my first post here and I am pretty new to kaggle too. I am an engineer with some experience in data analytics but completely new to machine learning. I want to get into this world to bring my skills and my career to the next level….

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9th Electron Tomography Congress

The 9th electron tomography congress will bring together the leading experts in hardware development, software development, and the diverse set of applications of electron tomography, particularly in biology. Topics covered will include:  • Recent developments in tomography of large volume samples via FIB milling • Correlative light and electron microscopy •…

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