Aligning 23andme to reference genome

Aligning 23andme to reference genome

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I’ve got some 23andMe data that I’m playing around with and was wondering if the SNPs could be aligned to a reference genome to subsequently be turned into a VCF. The txt file has the genomic positions so I guess it’s possible? I just don’t know which tool and/or parameters should be appropiate.

Here’s an example of what the data looks like.

rsid    chromosome  position    genotype
rs548049170 1   69869   TT
rs9283150   1   565508  AA
rs116587930 1   727841  GG

Thanks for any guidance


alignment


txt


23andme

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