Aligning 23andme to reference genome
I’ve got some 23andMe data that I’m playing around with and was wondering if the SNPs could be aligned to a reference genome to subsequently be turned into a VCF. The txt file has the genomic positions so I guess it’s possible? I just don’t know which tool and/or parameters should be appropiate.
Here’s an example of what the data looks like.
rsid chromosome position genotype rs548049170 1 69869 TT rs9283150 1 565508 AA rs116587930 1 727841 GG
Thanks for any guidance
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