Corelate TCR data to clusters/GEX/CITEseq data
I just added my TCR VDJ data as metadata to my Seurat object (as described in the tutorial here). So, I basically ended up with two different collumns of metadata where my barcodes are assigned to the clonotypes and the cdr3 sequences.
As a next step I would like to correlate my clonotypes to certain features of my gene expression or my Cite seq data. Or for example check the frequency of a certain clonotype within each of my umap clusters.
Does anyone have in mind any way or package that would help me with this approach?
Thanks a lot in advance
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