PyMol – molecule export problem
I have a molecule in PyMol which I want to open in ChimeraX. But after exporting the molecule as .pdb, some structural information seems to be lost – regions that in the PyMol session file are embedded into helices are now loops (this regards to several residues only). If I open the .pdb in PyMol, it looks the same as in chimeraX. I have no idea what I keep doing wrong, any hints? The first 14 residues of the original protein (from PDB, corresponding to Histag) were removed with a custom PyMol script which changed residues enumeration so that it properly starts with 1 – that is why the molecule from PyMol is needed. I would be grateful for the help.
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