Error in DESeqDataSetFromMatrix Function in DESeq Library

Error in DESeqDataSetFromMatrix Function in DESeq Library

1

I am trying to create a DESeq dataset object from a dataset in GEO as follows:

deseq2_142731 <- DESeqDataSetFromMatrix(countData = GSE142731[,2:ncol(GSE142731)],colData = labels_gse142731,design = ~V1)

However, I get an error:

Error in DESeqDataSet(se, design = design, ignoreRank) : some values in assay are not integers

Both the colData and countData variables are from GEO, they have the same dimension. Please, any ideas on how to handle this?


Differential


Gene


DESeq


R


Expression

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