How to visualise a phylogenetic tree with amino acids (double letter repeat) multiple-sequence alignment?
I have a fasta file as shown below,
>t1 NI-NG-NR-NN-NG-HD-HD >t_temp5 NG-NG-NI-N*-NR-NI-NN-NG-NG-HD >tal8 NG-NG-NI-N*-ND-NI-NN-NG-NG-H*-NH-NI
I have a newick file as follows,
I need to visualise both the tree and rvd.fasta file (multiple-sequence alignment file) together. The expected output illustration should be similar to the model_picture shown here,
With the help of my previous post and ete toolkit I have learned how to combine phylogenetic tree with multiple-sequence alignment, but here the multiple-sequence alignment is different from the usual msa pattern. Therefore, please help me to do the same.
Thanks in advance.
• 13 views