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Open Source Biology & Genetics Interest Group

Open source scripts, reports, and preprints for in vitro biology, genetics, bioinformatics, crispr, and other biotech applications.

 Posted in Research

blastpgp -b parameter?

 August 11, 2021

blastpgp -b parameter?

0



hey do you know what is for -b parameter in blastpgp?

blastpgp -d db -a 6 -e 0.005 -h 0.005 -j 5 -v 50 -b 750

cheers


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Rにおけるバイオ画像解析入門: Introduction to Bioimaging Analysis in R

久米 慧嗣 Satoshi Kume (大阪電気通信大学 Osaka Electro-Communication University, 日本 Japan)

4:00 PM - 5:00 PM JST (Japan Standard Time) on Thursday, Nov. 4th, 2021
JAPANESE WORKSHOP

このワークショップでは、BioconductorパッケージであるEBImageを使って、Rでの画像処理・画像解析の基本的な方法を扱う。次に、BioImageDbsパッケージを用いて、ExperimentHubからの画像データの取得を行う。さらに、rMiWパッケージが提供する、Deep learningモデルの1つであるU-NETモデルを用いて、教師有り画像セグメンテーション(領域分割)を学び。このワークショップは、Orchestra環境にて実施する。
This workshop covers basic methods of the image processing and image analysis in R using the Bioconductor package “EBImage” and the Orchestra platform. In addition, the image dataset is obtained from ExperimentHub using the “BioImageDbs” package. Using this dataset, we perform a supervised image segmentation using the U-NET model, one of deep learning models, provided by the rMiW package.


Moderator: 露崎 弘毅 Koki Tsuyuzaki (理化学研究所 RIKEN, 日本 Japan)
Rにおけるバイオ画像解析入門: Introduction to Bioimaging Analysis in R
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