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Open Source Biology & Genetics Interest Group

Open source scripts, reports, and preprints for in vitro biology, genetics, bioinformatics, crispr, and other biotech applications.

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 Posted in Research

What is the best way to publish data from LIMS/ELN to DataLake

 August 11, 2021

What is the best way to publish data from LIMS/ELN to DataLake

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What is the best Strategy/Technique (like DB sync, push using APIs etc…) to publish Experiment/Study data from LIMS/ELN to Data lake/Data Warehouse?


ELN


DataLake


Warehouse


LIMS

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Tagged ELN, LIMS

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Sequence alignment in Subio on personal PC →
← CWL capture multiple output files with prefix

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AMP BAM bin Bioconductor Bioinformatics cas9 cluster clusters crispr diagnostic DNA EdU ERA FASTA fastq FDA genomic ggplot ggplot2 github GUIDANCE LIU MD mol mRNA NA ncbi NGS openAPI PASS PCR phd PubMed python pytorch query R RNA rRNA Rstudio sample stem VCF Vertex ~jobs

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