Skip to content

Open Source Biology & Genetics Interest Group

Open source tools and preprints for in vitro biology, genetics, bioinformatics, crispr, and other biotech applications.

  • About
  • Submit content
  • Editorial board
  • Advisory board
  • Media partners
  • jobs

Open Source Biology & Genetics Interest Group

Open source tools and preprints for in vitro biology, genetics, bioinformatics, crispr, and other biotech applications.

 Posted in kegg, R, STAR

How to retrieve KO IDs for a list of genes?

 August 12, 2021

How to retrieve KO IDs for a list of genes?

2

Hi, community!!! I have downloaded a list of genes from the MetaCyc database for some bacterial species. I want to find out their respective KO IDs. Can anyone please tell me how can I do that?

Thanks


KEGG


database

• 27 views

Source link

Tagged kegg

Post navigation

how to use ESTIMATE to infer tumor purity and stromal score from RNA-seq data? →
← Chipseq visualization how to draw the figure

Tags

.NET Bio AGAT AlphaFold AmtDB annovar Ascalaph Designer ATAC ATAC-SEQ AutoDock Avogadro BAM bash bcl2fastq beagle bedGraph BEDtools bigWig Bioclipse Bioconductor BioJava BioLabDonkey BioPerl Biopython biorender bioRxiv biotech BLAST cas9 cdx clustprofiler CNA cnetplot CP2K crispr cytoscape DEL deseq2 DiffBind DNA dnasp electrotransfection EMBL EMBOSS FASTA fastq GATK gcta GDAC GEDmatch gemBS geneMANIA GenePattern GenGIS Genomespace GENtle GEO gff3 gffread github gitlab GMOD GPL GROMACS GSEA GSTAr,GSTA gtex gtf GWAS HGNC hisat2 HMM HOMER HTseq I-TASSER IGV indel InferCNV Integrated Genome Browser InterMine ION torrent kaggle kegg LabKey Server LAMMPS logFC MAplot mega-x metawrap methylkit mol mothur mRNA mtDNA MUMmer nextflow PacBio PathVisio PCA PDBE plink PPI Promethease psiblast pymol python qPCR qqplot Quantseq R regex RMA RNA RNAseq RPKM RRBS SAMtools scATAC-SEQ scRNA SED Shapeit shell snap SnpEff snpsift SOAP Suite SPSS STAR tcga TIGRFAMs tophat2 tRNA UGENE VCF VDB VEP VOTCA WGCNA wilcoxon zsh ~jobs

Categories

  • AGAT (105)
  • AlphaFold (118)
  • AmtDB (3,757)
  • annovar (15)
  • Ascalaph Designer (1)
  • ATAC (160)
  • ATAC-SEQ (83)
  • AutoDock (16)
  • Avogadro (10)
  • BAM (392)
  • bash (609)
  • bcl2fastq (8)
  • beagle (17)
  • bedGraph (21)
  • BEDtools (57)
  • bigWig (25)
  • Bioclipse (1)
  • Bioconductor (422)
  • BioJava (2)
  • BioLabDonkey (2)
  • BioPerl (14)
  • Biopython (88)
  • biorender (3)
  • bioRxiv (86)
  • biotech (1,319)
  • BLAST (272)
  • cas9 (398)
  • cdx (72)
  • CNA (85)
  • cnetplot (4)
  • CP2K (22)
  • crispr (492)
  • cytoscape (31)
  • DEL (2,115)
  • deseq2 (220)
  • DiffBind (20)
  • DNA (2,071)
  • dnasp (5)
  • electrotransfection (129)
  • EMBL (742)
  • EMBOSS (15)
  • FASTA (399)
  • fastq (358)
  • GATK (102)
  • gcta (34)
  • GDAC (4)
  • GEDmatch (61)
  • gemBS (1)
  • geneMANIA (1)
  • GenePattern (5)
  • GenGIS (12)
  • Genomespace (1)
  • GENtle (27)
  • GEO (654)
  • gff3 (24)
  • gffread (4)
  • github (578)
  • gitlab (18)
  • GMOD (97)
  • GPL (236)
  • GROMACS (85)
  • GSEA (40)
  • gtex (23)
  • gtf (151)
  • GWAS (106)
  • HGNC (26)
  • hisat2 (54)
  • HMM (99)
  • HOMER (18)
  • HTseq (43)
  • I-TASSER (4)
  • IGV (116)
  • indel (94)
  • InferCNV (3)
  • Integrated Genome Browser (3)
  • InterMine (2)
  • ION torrent (20)
  • kaggle (194)
  • kegg (125)
  • LabKey Server (4)
  • LAMMPS (63)
  • logFC (23)
  • MAplot (4)
  • mega-x (2)
  • metawrap (4)
  • methylkit (8)
  • mol (1,373)
  • mothur (7)
  • mRNA (245)
  • mtDNA (171)
  • MUMmer (4)
  • nextflow (43)
  • PacBio (65)
  • PathVisio (4)
  • PCA (154)
  • PDBE (11)
  • plink (122)
  • PPI (818)
  • Promethease (6)
  • psiblast (2)
  • pymol (171)
  • python (912)
  • qPCR (48)
  • qqplot (5)
  • Quantseq (7)
  • R (6,613)
  • regex (9)
  • RMA (3,628)
  • RNA (2,930)
  • RNAseq (306)
  • RPKM (17)
  • RRBS (11)
  • SAMtools (246)
  • scATAC-SEQ (13)
  • scRNA (158)
  • SED (3,592)
  • Shapeit (17)
  • shell (132)
  • snap (87)
  • SnpEff (21)
  • snpsift (10)
  • SPSS (23)
  • STAR (4,137)
  • tcga (149)
  • TIGRFAMs (4)
  • tophat2 (9)
  • tRNA (52)
  • UGENE (10)
  • VCF (269)
  • VDB (15)
  • VEP (95)
  • VOTCA (5)
  • WGCNA (28)
  • wilcoxon (20)
  • zsh (12)
  • ~jobs (1,934)

Copyright © 2021 IRZU Inštitut za raziskovanje zvočnih umetnosti

FIRST CRISPR WORKSHOP IN EUROPE

Join us at the first hands-on CRISPR workshop in Europe taking place in Koper, Slovenia in July/August 2022. Click here for more info and get ready for a biological revolution.