Best current tool for deconvolution of bulk sample
Just asking around for some general opinions: I will receive bulk RNA-seq and ATAC-seq samples from the spleen (they are all immune cells). To have an idea about the percentages of each individual cell type in the bulk sample, what would be the tool you guys recommend? Immune cells are pretty well defined. I’m almost certain that I can find single cell data or highly purified bulk data for all possible populations.
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