Question regarding providing file path to indexed genome folder

HISAT2: Question regarding providing file path to indexed genome folder

0

hisat2 -p 1 -x hisatIndex/genome.fa –dta –rna-strandness RF -1 $R1 -2 $R2 -S genome.sam(ERR): “hisatIndex/genome.fa” does not exist
Exiting now …
this error showing up every time i run the code and I dont know what is the problem ?
note : that genome.fa is actually in histIndex folder .


hisat2


alignment


indexed

• 15 views

Source link