Ion Torrent BAM and FASTQ
Im new to the ION Torrent technology and need your help to figure this out. The Ion GeneStudio™ S5 System generates BAM files as its primary output. when i need a particular FASTQ file, i can use the FileExporter plugin and get the relevant FASTQ file.
My questions are
- Does the system generates a FASTQ file when generating the BAM file from WELLS file? (Illumina produce the FASTQ file as the raw data and we aligned them later)
- is the generated BAM file used by FileExpoter plugin to generate the FASTQ ?
- Can anyone explain the process between the WELLS file>BAM file?
Thanks a lot.
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