Change chromosome notation in dbSNP VCF file
Hiii, I have downloaded dbSNP VCf file from [ftp.ncbi.nih.gov/snp/organisms/human_9606/VCF/]
The format is as follows:
#CHROM POS ID REF ALT QUAL FILTER INFO
1 10019 rs775809821 TA T . . RS=775809821;RSPOS=10020;dbSNPBuildID=144;SSR=0;SAO=0;VP=0x050000020005000002000200;GENEINFO=DDX11L1:100287102;WGT=1;VC=DIV;R5;ASP
1 10039 rs978760828 A C . . RS=978760828;RSPOS=10039;dbSNPBuildID=150;SSR=0;SAO=0;VP=0x050000020005000002000100;GENEINFO=DDX11L1:100287102;WGT=1;VC=SNV;R5;ASP
1 10043 rs1008829651 T A . . RS=1008829651;RSPOS=10043;dbSNPBuildID=150;SSR=0;SAO=0;VP=0x050000020005000002000100;GENEINFO=DDX11L1:100287102;WGT=1;VC=SNV;R5;ASP
1 10051 rs1052373574 A G . . RS=1052373574;RSPOS=10051;dbSNPBuildID=150;SSR=0;SAO=0;VP=0x050000020005000002000100;GENEINFO=DDX11L1:100287102;WGT=1;VC=SNV;R5;ASP
1 10051 rs1326880612 A AC . . RS=1326880612;RSPOS=10051;dbSNPBuildID=151;SSR=0;SAO=0;VP=0x050000020005000002000200;GENEINFO=DDX11L1:100287102;WGT=1;VC=DIV;R5;ASP;TOPMED=0.99998407237512742,0.00001592762487257
I want to change the first column, i.e. #CHROM from 1 to chr1. I tried but it changed all 1 into chr1. I want it specifically for column1. Please suggest me how to do it. Thank you.
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