What is the best software for “phasing” in human population genomics with trio family pedigree?

What is the best software for “phasing” in human population genomics with trio family pedigree?

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Hi,

I am new to bioinformatics. Currently I have the a list of identified SNPs from trio human population. I am planning to do phasing to figure out the proportion of the SNPs coming from paternal and maternal?
I also have the pedigree file as well.

Just wondering what is the best R package, software that help me to do such analysis? Dose SHAPEIT4 or smartphase or PULSAR good for this purpose?


Trio


Phasing


genomics


pedigree


SNP

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