PLINK –lasso Issue (‘Warning: No Phenotypes Present’) even with a covar file is present
I’m utilizing PLINK –lasso for feature/SNP selection, running the following command:
plink --bfile SNPsFile --allow-no-sex --lasso 0.46 --covar pheno.txt --covar-number 1-9 --make-bed --out Test
Resulting in the output below:
Even with covars uploaded, I am still getting this issue. Pheno.txt is a tab-delimited .txt file.
Any solutions? Thanks in advance.
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