WGS bacterial metagenomic pipeline – group comparison
I was wondering what’s the recent state-of-the-art pipeline to do metagenome comparison, with multiple samples and groups? E.g. I have several “patients” and several “controls” in the form of WGS reads, and I want to run a comparison (on some level of taxonomical resolution) to identify the species or other taxonomic clusters that are most different between them.
I’m not experienced in metagenomics at all, this is a random project I wanted to try. Thus a few sentence intro about the state of things in the field would be much appreciated 🙂
• 13 views
Read more here: Source link