Bioconductor – GGtools

DOI: 10.18129/B9.bioc.GGtools  

 

This package is for version 3.12 of Bioconductor.
This package has been removed from Bioconductor.
For the last stable, up-to-date release version, see GGtools.

software and data for analyses in genetics of gene expression

Bioconductor version: 3.12

software and data for analyses in genetics of gene expression and/or DNA methylation

Author: VJ Carey <stvjc at channing.harvard.edu>

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

Citation (from within R,
enter citation("GGtools")):

Installation

To install this package, start R (version
“4.0”) and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("GGtools")

For older versions of R, please refer to the appropriate
Bioconductor release.

Documentation

To view documentation for the version of this package installed
in your system, start R and enter:

browseVignettes("GGtools")

 

Details

biocViews GeneExpression, GeneticVariability, Genetics, SNP, Software
Version 5.25.3
In Bioconductor since BioC 1.9 (R-2.4) (14.5 years)
License Artistic-2.0
Depends R (>= 2.14), GGBase(>= 3.19.7), data.table, parallel, Homo.sapiens
Imports methods, utils, stats, BiocGenerics(>= 0.25.1), snpStats, ff, Rsamtools, AnnotationDbi, Biobase, bit, VariantAnnotation, hexbin, rtracklayer, Gviz, stats4, S4Vectors(>= 0.9.25), IRanges, GenomeInfoDb, GenomicRanges(>= 1.29.6), iterators, Biostrings, ROCR, biglm, ggplot2, reshape2
LinkingTo
Suggests GGdata, illuminaHumanv1.db, SNPlocs.Hsapiens.dbSNP144.GRCh37, multtest, aod, rmeta
SystemRequirements
Enhances MatrixEQTL, foreach, doParallel, gwascat
URL
Depends On Me ceu1kg, eQTL
Imports Me ceuhm3, GeneGeneInteR
Suggests Me cgdv17, dsQTL, GGBase, hmyriB36
Links To Me
Build Report  

Package Archives

Follow
Installation
instructions to use this
package in your R session.

Read more here: Source link