Seeking simple HiC mapping and visualization tutorial for small genome
I have Arima HiC reads and a 600Mbp assembly.
I’ve been looking for a bare-bones get-me-started tutorial that can tell me how to map the reads to the assembly, produce the contact information in the right format, and then set it up for visualization.
From what I’ve read, HiGlass is the best visualization tool, and Juicebox is also widely used.
I have no prior experience using HiC, other than using a HiGlass server set up by another lab to visualize their own data.
Thanks for any help,
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