DOI: 10.18129/B9.bioc.scRNAseq
This package is for version 3.11 of Bioconductor;
for the stable, up-to-date release version, see
scRNAseq.
Collection of Public Single-Cell RNA-Seq Datasets
Bioconductor version: 3.11
Gene-level counts for a collection of public scRNA-seq datasets, provided as SingleCellExperiment objects with cell- and gene-level metadata.
Author: Davide Risso [aut, cph], Michael Cole [aut], Aaron Lun [ctb, cre]
Maintainer: Aaron Lun <infinite.monkeys.with.keyboards at gmail.com>
Citation (from within R,
enter citation("scRNAseq")
):
Installation
To install this package, start R (version
“4.0”) and enter:
if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("scRNAseq")
For older versions of R, please refer to the appropriate
Bioconductor release.
Documentation
To view documentation for the version of this package installed
in your system, start R and enter:
browseVignettes("scRNAseq")
Details
biocViews | ExperimentData, ExperimentHub, ExpressionData, RNASeqData, SequencingData, SingleCellData |
Version | 2.2.0 |
License | CC0 |
Depends | SingleCellExperiment |
Imports | methods, BiocGenerics, S4Vectors, GenomicRanges, SummarizedExperiment, ExperimentHub |
LinkingTo | |
Suggests | BiocStyle, AnnotationHub, AnnotationDbi, GenomicFeatures, knitr, rmarkdown, BiocFileCache, testthat |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me | batchelor, clusterExperiment, dittoSeq, iSEE, iSEEu, scater, scFeatureFilter, scone, scran, SingleCellExperiment, singleCellTK, SingleR, SummarizedBenchmark, zinbwave |
Links To Me | |
Build Report |
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