How to export count data as .csv file in Seurat
I’m trying to export the log normalized count data from Seurat in to a .csv file and get the following error:
library (Seurat) fib.data <- subset(onlyharmonfib, subset = nFeature_RNA > 200 & nFeature_RNA < 2500 & percent.mito <5) fib.data_norm<- NormalizeData(fib.data) fib_count <- GetAssayData(object = fib.data_norm, assay = "RNA", slot = "data") write.csv(as.matrix(fib_count), file = "file_path", quote = FALSE) Error in file(file, ifelse(append, "a", "w")) : cannot open the connection
Is there an easier method to get the data in a .csv file?
Thank you for your help!
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