How to export count data as .csv file in Seurat

How to export count data as .csv file in Seurat

1

Hi,

I’m trying to export the log normalized count data from Seurat in to a .csv file and get the following error:

library (Seurat)
fib.data <- subset(onlyharmonfib, subset = nFeature_RNA > 200 & nFeature_RNA < 2500 & percent.mito <5)
fib.data_norm<- NormalizeData(fib.data)
fib_count <- GetAssayData(object = fib.data_norm, assay = "RNA", slot = "data")
write.csv(as.matrix(fib_count), file = "file_path", quote = FALSE)

Error in file(file, ifelse(append, "a", "w")) : cannot open the connection

Is there an easier method to get the data in a .csv file?

Thank you for your help!


Seurat


countdata


R

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