Bioconductor – DuoClustering2018 (development version)

DOI: 10.18129/B9.bioc.DuoClustering2018  

 

This is the development version of DuoClustering2018; for the stable release version, see
DuoClustering2018.

Data, Clustering Results and Visualization Functions From Duò et al (2018)

Bioconductor version: Development (3.14)

Preprocessed experimental and simulated scRNA-seq data sets used for evaluation of clustering methods for scRNA-seq data in Duò et al (2018). Also contains results from applying several clustering methods to each of the data sets, and functions for plotting method performance.

Author: Angelo Duò, Charlotte Soneson

Maintainer: Angelo Duò <angelo.duo at icloud.com>

Citation (from within R,
enter citation("DuoClustering2018")):

Installation

To install this package, start R (version
“4.1”) and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("DuoClustering2018")

For older versions of R, please refer to the appropriate
Bioconductor release.

Documentation

To view documentation for the version of this package installed
in your system, start R and enter:

browseVignettes("DuoClustering2018")

 

Details

biocViews ExperimentData, SingleCellData
Version 1.11.0
License GPL (>=2)
Depends
Imports ExperimentHub, utils, magrittr, dplyr, tidyr, mclust, ggplot2, purrr, reshape2, viridis, ggthemes, stats, methods
LinkingTo
Suggests knitr, rmarkdown, BiocStyle, iSEE, scater, SingleCellExperiment, SummarizedExperiment, plyr
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me corral, scry
Links To Me
Build Report  

Package Archives

Follow
Installation
instructions to use this
package in your R session.

Read more here: Source link