This package is for version 3.9 of Bioconductor;
for the stable, up-to-date release version, see
HiTC.
High Throughput Chromosome Conformation Capture analysis
Bioconductor version: 3.9
The HiTC package was developed to explore high-throughput ‘C’ data such as 5C or Hi-C. Dedicated R classes as well as standard methods for quality controls, normalization, visualization, and further analysis are also provided.
Author: Nicolas Servant
Maintainer: Nicolas Servant <nicolas.servant at curie.fr>
Citation (from within R,
enter citation("HiTC")):
Installation
To install this package, start R (version
“3.6”) and enter:
if (!requireNamespace("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("HiTC")
For older versions of R, please refer to the appropriate
Bioconductor release.
Documentation
To view documentation for the version of this package installed
in your system, start R and enter:
browseVignettes("HiTC")
Details
| biocViews | HiC, HighThroughputSequencing, Sequencing, Software |
| Version | 1.28.0 |
| In Bioconductor since | BioC 2.10 (R-2.15) (7.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 2.15.0), methods, IRanges, GenomicRanges |
| Imports | Biostrings, graphics, grDevices, rtracklayer, RColorBrewer, Matrix, parallel, GenomeInfoDb |
| LinkingTo | |
| Suggests | BiocStyle, HiCDataHumanIMR90 |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | HiCDataHumanIMR90 |
| Links To Me | |
| Build Report |
Package Archives
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Installation instructions to use this
package in your R session.
Read more here: Source link