How to generate a combined read count txt file with header as file name
I do have multiple txt file for RNAseq read count, is it possible to generate a single txt file with the file name as column header;
txt file having read count like this: so first column is same in all files.
BGIOSGA000001 0
BGIOSGA000002 12
BGIOSGA000003 0
BGIOSGA000004 0
BGIOSGA000005 0
BGIOSGA000006 0
BGIOSGA000007 0
BGIOSGA000008 15
and txt file name are like this:
Root_T3_S_R7_S56_L001.COUNT.txt
Leaf_T2_F_R5_S8_L001.COUNT.txt
so I want out put like this:
Root_T3_S_R7_S56 Leaf_T2_F_R5_S8
BGIOSGA000001 0 4
BGIOSGA000002 12 0
BGIOSGA000003 0 3
BGIOSGA000004 0 2
BGIOSGA000005 0 4
I will be thankful for your help.
Kind Regards,
Bioinfonext
• 1.1k views
Read more here: Source link