Association test to get p values and OR in plink2, and file input format

Association test to get p values and OR in plink2, and file input format

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Are there any commands for association testing in plink2 which will output p-value and OR in the resulting output file? If so, what kind of file input do I need to use for such commands…a vcf.gz file currently for an ecDNA+ cancer group and an ecDNA- cancer group which I’m using in a GWAS.


association


plink2


input


GWAS

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