Bioconductor – PICS

DOI: 10.18129/B9.bioc.PICS  

 

Probabilistic inference of ChIP-seq

Bioconductor version: Release (3.5)

Probabilistic inference of ChIP-Seq using an empirical Bayes mixture model approach.

Author: Xuekui Zhang <xzhang at stat.ubc.ca>, Raphael Gottardo <rgottard at fhcrc.org>

Maintainer: Renan Sauteraud <rsautera at fhcrc.org>

Citation (from within R,
enter citation("PICS")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("PICS")

Documentation

To view documentation for the version of this package installed
in your system, start R and enter:

browseVignettes("PICS")

 

Details

biocViews ChIPSeq, Clustering, Sequencing, Software, Visualization
Version 2.20.0
In Bioconductor since BioC 2.6 (R-2.11) (7.5 years)
License Artistic-2.0
Depends R (>= 2.14.0), BiocGenerics(>= 0.1.3)
Imports methods, stats4, IRanges, GenomicRanges, graphics, grDevices, stats, Rsamtools, GenomicAlignments, S4Vectors
LinkingTo
Suggests ShortRead, rtracklayer, parallel
SystemRequirements GSL (GNU Scientific Library)
Enhances
URL
Depends On Me
Imports Me PING
Suggests Me
Build Report  

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Read more here: Source link