Bedfile format deeptools
Hello everyone,
Using deeptools I am trying to plot the enrichment in Genebody and TSS for this we have to give one BED file region of interest in computeMatrix. I am bit confused about the format based on a thread in biostar TSS metaprofile using Deeptoolsbased on this thread I have converted my bed file trascript wise to gene wise can anyone suggest me is it a way of doing?
Original bed file transcript wise bed file
1 4970856 4971128 ENSMUSG00000085623 +
1 4971631 4971828 ENSMUSG00000085623 +
1 4973564 4976820 ENSMUSG00000085623 +
1 6213292 6213347 ENSMUSG00000090031 -
1 6214232 6214590 ENSMUSG00000090031 -
1 4879201 4880669 ENSMUSG00000062588 -
1 4880048 4880051 ENSMUSG00000062588 -
1 4880051 4880651 ENSMUSG00000062588 -
1 4880648 4880651 ENSMUSG00000062588 -
convert Gene wise bed file
1 4970856 4976820 ENSMUSG00000085623 +
1 6213292 6214590 ENSMUSG00000090031 -
1 4879201 4880669 ENSMUSG00000062588 -
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