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This package is for version 3.4 of Bioconductor;
for the stable, up-to-date release version, see
netbenchmark.
Benchmarking of several gene network inference methods
Bioconductor version: 3.4
This package implements a benchmarking of several gene network inference algorithms from gene expression data.
Author: Pau Bellot, Catharina Olsen, Patrick Meyer, with contributions from Alexandre Irrthum
Maintainer: Pau Bellot <pau.bellot at upc.edu>
Citation (from within R,
enter citation("netbenchmark")
):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("netbenchmark")
Documentation
Details
biocViews | GeneExpression, GraphAndNetwork, Microarray, Network, NetworkInference, Software |
Version | 1.6.0 |
In Bioconductor since | BioC 3.1 (R-3.2) (2 years) |
License | CC BY-NC-SA 4.0 |
Depends | grndata(>= 0.99.3) |
Imports | Rcpp (>= 0.11.0), minet, randomForest, c3net, PCIT, GeneNet, tools, pracma, Matrix, corpcor, fdrtool |
LinkingTo | Rcpp |
Suggests | RUnit, BiocGenerics, knitr, graph |
SystemRequirements | |
Enhances | |
URL | imatge.upc.edu/netbenchmark/ |
Depends On Me | |
Imports Me | |
Suggests Me | |
Build Report |
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Read more here: Source link