Bioconductor – netbenchmark

 
 

This package is for version 3.4 of Bioconductor;
for the stable, up-to-date release version, see
netbenchmark.

Benchmarking of several gene network inference methods

Bioconductor version: 3.4

This package implements a benchmarking of several gene network inference algorithms from gene expression data.

Author: Pau Bellot, Catharina Olsen, Patrick Meyer, with contributions from Alexandre Irrthum

Maintainer: Pau Bellot <pau.bellot at upc.edu>

Citation (from within R,
enter citation("netbenchmark")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("netbenchmark")

Documentation

Details

biocViews GeneExpression, GraphAndNetwork, Microarray, Network, NetworkInference, Software
Version 1.6.0
In Bioconductor since BioC 3.1 (R-3.2) (2 years)
License CC BY-NC-SA 4.0
Depends grndata(>= 0.99.3)
Imports Rcpp (>= 0.11.0), minet, randomForest, c3net, PCIT, GeneNet, tools, pracma, Matrix, corpcor, fdrtool
LinkingTo Rcpp
Suggests RUnit, BiocGenerics, knitr, graph
SystemRequirements
Enhances
URL imatge.upc.edu/netbenchmark/
Depends On Me
Imports Me
Suggests Me
Build Report  

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