GWAS results: base pair annotation

GWAS results: base pair annotation

1

Hello,

I have a question regarding annotation of GWAS results.

Here is the sample files

File1 Below is the File1 with HG38id column name that contains chromosome number and base pair position.

HG38id
13:21325916
5:128327887
19:44906745
1:88820990
17:44981703

File2 Below is the File2 with HG38id column name that contains chromosome number and base pair position.

HG38id
13:21325516
5:128327887
19:44906745
1:88820990
17:44981903

I would like to know the ways to check the nearest base pair position between File1 and File2. For instance, 500 base pair lower stream and upper stream.

The output for above given File1 and File2 with 500 base pair lower stream and upper stream is

13:21325916
17:44981703 

because these two base pair positions are nearby 500 bases in both files.

What is the way to find the nearest base pair positions (for instance, 500 or 200 base pair lower stream and upper stream) in large files?

Thanks in advance

Sincerely,
Hema


results


Annotation


GWAS

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