Hisat2 error

Hisat2 error

1

Hi all

I am using this command.

hisat2 -p 8 -q -X ${READDIR}/hisat2_index_Cm_genome  -1 ${READDIR}/tr.p.UE-2955-CMLib1_S88_L004_R1_001.fastq.gz -2 ${READDIR}/tr.p.UE-2955-CMLib1_S88_L004_R2_001.fastq.gz -S ${Output}/UE-2955-CMLib1.sam

Error: Encountered internal HISAT2 exception (#1)

Need a help to fix this problem.

thanks


Hisat2

• 24 views

It is a lowercase x, so -x for the index.


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