List of all packages in BioConductor transition dependency level 1 failing due issue with either RUnit or testthat)


thanks to several hints I was able to nearly solve all issues.

On Thu, Sep 02, 2021 at 01:12:29PM +0200, Andreas Tille wrote:
> The packages in question are mentioned as Test-Depends and I have no
> idea why these are not found.

It was solved by accorcing debian/tests/autopkgtest-pkg-r.conf featuring
the needed extra_depends.

> The transition is effectively blocked by these issues and any ideas are
> really welcome.

The last blocker is

> skip_if_not_installed("tximportData")
Error: Reason: tximportData cannot be loaded
Execution halted 

Dylan, in debian/tests/autopkgtest-pkg-r.hook I removed all tests in
need of r-bioc-tximportdata (which is in new now - an error will be
triggered once it gets accepted, thus we get a "signal" to remove that
means).  I wonder whether your patch[1] should be changed to simply
remove the line


and be done.  If you have a better solution please apply this and feel
free to upload.

Kind regards and thanks to all who gave useful hints




Read more here: Source link