List of all packages in BioConductor transition dependency level 1 failing due issue with either RUnit or testthat)

Hi,

thanks to several hints I was able to nearly solve all issues.

On Thu, Sep 02, 2021 at 01:12:29PM +0200, Andreas Tille wrote:
> 
> The packages in question are mentioned as Test-Depends and I have no
> idea why these are not found.

It was solved by accorcing debian/tests/autopkgtest-pkg-r.conf featuring
the needed extra_depends.

> The transition is effectively blocked by these issues and any ideas are
> really welcome.

The last blocker is

   https://salsa.debian.org/r-pkg-team/r-bioc-tximport/-/jobs/1902367

...
> skip_if_not_installed("tximportData")
Error: Reason: tximportData cannot be loaded
Execution halted 
...

Dylan, in debian/tests/autopkgtest-pkg-r.hook I removed all tests in
need of r-bioc-tximportdata (which is in new now - an error will be
triggered once it gets accepted, thus we get a "signal" to remove that
means).  I wonder whether your patch[1] should be changed to simply
remove the line

    library(tximportData)

and be done.  If you have a better solution please apply this and feel
free to upload.

Kind regards and thanks to all who gave useful hints

     Andreas.


[1] 
https://salsa.debian.org/r-pkg-team/r-bioc-tximport/-/blob/master/debian/patches/Fix_autopkgtest.patch

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