Bioconductor – MetID

DOI: 10.18129/B9.bioc.MetID  

 

This package is for version 3.11 of Bioconductor;
for the stable, up-to-date release version, see
MetID.

Network-based prioritization of putative metabolite IDs

Bioconductor version: 3.11

This package uses an innovative network-based approach that will enhance our ability to determine the identities of significant ions detected by LC-MS.

Author: Zhenzhi Li <zzrickli at gmail.com>

Maintainer: Zhenzhi Li <zzrickli at gmail.com>

Citation (from within R,
enter citation("MetID")):

Installation

To install this package, start R (version
“4.0”) and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MetID")

For older versions of R, please refer to the appropriate
Bioconductor release.

Documentation

To view documentation for the version of this package installed
in your system, start R and enter:

browseVignettes("MetID")

 

Details

biocViews AssayDomain, BiologicalQuestion, Infrastructure, KEGG, Network, ResearchField, Software, StatisticalMethod, Technology, WorkflowStep
Version 1.6.0
In Bioconductor since BioC 3.8 (R-3.5) (2 years)
License Artistic-2.0
Depends R (>= 3.5)
Imports utils (>= 3.3.1), stats (>= 3.4.2), devtools (>= 1.13.0), stringr (>= 1.3.0), Matrix (>= 1.2-12), igraph (>= 1.2.1), ChemmineR(>= 2.30.2)
LinkingTo
Suggests knitr (>= 1.19), rmarkdown (>= 1.8)
SystemRequirements
Enhances
URL github.com/ressomlab/MetID
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