DOI: 10.18129/B9.bioc.ReactomeContentService4R
This is the development version of ReactomeContentService4R; for the stable release version, see
ReactomeContentService4R.
Interface for the Reactome Content Service
Bioconductor version: Development (3.14)
Reactome is a free, open-source, open access, curated and peer-reviewed knowledgebase of bio-molecular pathways. This package is to interact with the Reactome Content Service API. Pre-built functions would allow users to retrieve data and images that consist of proteins, pathways, and other molecules related to a specific gene or entity in Reactome.
Author: Chi-Lam Poon [aut, cre] 
, Reactome [cph]
Maintainer: Chi-Lam Poon <clpoon807 at gmail.com>
Citation (from within R,
enter citation("ReactomeContentService4R")):
Installation
To install this package, start R (version
“4.1”) and enter:
if (!requireNamespace("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("ReactomeContentService4R")
For older versions of R, please refer to the appropriate
Bioconductor release.
Documentation
To view documentation for the version of this package installed
in your system, start R and enter:
browseVignettes("ReactomeContentService4R")
Details
| biocViews | DataImport, Pathways, Reactome, Software |
| Version | 1.1.0 |
| In Bioconductor since | BioC 3.13 (R-4.1) ( |
| License | Apache License (>= 2.0) | file LICENSE |
| Depends | |
| Imports | httr, jsonlite, utils, magick (>= 2.5.1), data.table, doParallel, foreach, parallel |
| LinkingTo | |
| Suggests | pdftools, testthat, knitr, rmarkdown |
| SystemRequirements | |
| Enhances | |
| URL | github.com/reactome/ReactomeContentService4R |
| BugReports | github.com/reactome/ReactomeContentService4R/issues |
| Depends On Me | |
| Imports Me | ReactomeGraph4R |
| Suggests Me | |
| Links To Me | |
| Build Report |
Package Archives
Follow
Installation instructions to use this
package in your R session.
Read more here: Source link